Strain Fitness in Escherichia coli BW25113 around b2925
Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-2-butenol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
3,067,218 | + | mscS | b2924 | 0.29 | -1.2 |
3,067,218 | + | mscS | b2924 | 0.29 | -1.7 |
3,067,220 | - | mscS | b2924 | 0.29 | +0.1 |
3,067,223 | + | mscS | b2924 | 0.30 | -1.0 |
3,067,223 | + | mscS | b2924 | 0.30 | +0.4 |
3,067,223 | + | mscS | b2924 | 0.30 | -0.9 |
3,067,223 | + | mscS | b2924 | 0.30 | +0.1 |
3,067,225 | - | mscS | b2924 | 0.30 | +0.1 |
3,067,225 | - | mscS | b2924 | 0.30 | -0.3 |
3,067,245 | - | mscS | b2924 | 0.32 | +0.5 |
3,067,253 | - | mscS | b2924 | 0.33 | +1.3 |
3,067,253 | - | mscS | b2924 | 0.33 | +0.2 |
3,067,253 | - | mscS | b2924 | 0.33 | -0.0 |
3,067,253 | - | mscS | b2924 | 0.33 | +1.0 |
3,067,352 | + | mscS | b2924 | 0.44 | +0.1 |
3,067,363 | - | mscS | b2924 | 0.46 | +1.0 |
3,067,373 | - | mscS | b2924 | 0.47 | +0.4 |
3,067,389 | + | mscS | b2924 | 0.49 | +0.2 |
3,067,397 | - | mscS | b2924 | 0.50 | -0.3 |
3,067,397 | - | mscS | b2924 | 0.50 | -1.3 |
3,067,399 | + | mscS | b2924 | 0.50 | -0.2 |
3,067,399 | + | mscS | b2924 | 0.50 | +0.6 |
3,067,399 | + | mscS | b2924 | 0.50 | +0.3 |
3,067,399 | + | mscS | b2924 | 0.50 | +0.7 |
3,067,407 | - | mscS | b2924 | 0.51 | +0.3 |
3,067,416 | - | mscS | b2924 | 0.52 | +0.5 |
3,067,511 | + | mscS | b2924 | 0.63 | +0.7 |
3,067,519 | - | mscS | b2924 | 0.64 | -1.9 |
3,067,519 | - | mscS | b2924 | 0.64 | -0.2 |
3,067,530 | + | mscS | b2924 | 0.65 | -0.2 |
3,067,552 | + | mscS | b2924 | 0.68 | +0.5 |
3,067,670 | - | mscS | b2924 | 0.81 | +0.3 |
3,067,745 | + | +0.4 | |||
3,067,745 | + | +0.6 | |||
3,067,753 | + | +0.1 | |||
3,067,788 | - | +0.2 | |||
3,067,862 | + | -0.1 | |||
3,067,908 | - | +0.4 | |||
3,067,908 | - | +0.2 | |||
3,069,297 | - | +0.8 | |||
3,069,440 | - | -0.4 | |||
3,069,440 | - | -0.6 |
Or see this region's nucleotide sequence