Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hycG and hycF overlap by 1 nucleotides hycF and hycE are separated by 9 nucleotides hycE and hycD are separated by 17 nucleotides hycD and hycC are separated by 2 nucleotides
b2719: hycG - hydrogenase 3 and formate hydrogenase complex, HycG subunit (NCBI), at 2,841,465 to 2,842,232
hycG
b2720: hycF - formate hydrogenlyase complex iron-sulfur protein (NCBI), at 2,842,232 to 2,842,774
hycF
b2721: hycE - hydrogenase 3, large subunit (NCBI), at 2,842,784 to 2,844,493
hycE
b2722: hycD - hydrogenase 3, membrane subunit (NCBI), at 2,844,511 to 2,845,434
hycD
b2723: hycC - NADH dehydrogenase subunit N (NCBI), at 2,845,437 to 2,847,263
hycC
Position (kb)
2842
2843
2844
2845 Strain fitness (log2 ratio)
-2
-1
0
1 at 2841.821 kb on - strand, within hycG at 2841.861 kb on - strand, within hycG at 2841.870 kb on - strand, within hycG at 2842.019 kb on + strand, within hycG at 2842.047 kb on - strand, within hycG at 2842.093 kb on - strand, within hycG at 2842.093 kb on - strand, within hycG at 2842.113 kb on + strand, within hycG at 2842.245 kb on + strand at 2842.253 kb on - strand at 2842.346 kb on + strand, within hycF at 2842.367 kb on - strand, within hycF at 2842.377 kb on + strand, within hycF at 2842.384 kb on - strand, within hycF at 2842.490 kb on + strand, within hycF at 2842.523 kb on - strand, within hycF at 2842.523 kb on - strand, within hycF at 2842.545 kb on + strand, within hycF at 2842.584 kb on + strand, within hycF at 2842.584 kb on + strand, within hycF at 2842.584 kb on + strand, within hycF at 2842.599 kb on + strand, within hycF at 2842.773 kb on - strand at 2842.853 kb on - strand at 2842.890 kb on + strand at 2842.890 kb on + strand at 2842.890 kb on + strand at 2843.106 kb on - strand, within hycE at 2843.139 kb on + strand, within hycE at 2843.144 kb on + strand, within hycE at 2843.147 kb on - strand, within hycE at 2843.254 kb on + strand, within hycE at 2843.407 kb on - strand, within hycE at 2843.459 kb on + strand, within hycE at 2843.564 kb on + strand, within hycE at 2843.572 kb on - strand, within hycE at 2843.600 kb on + strand, within hycE at 2843.600 kb on + strand, within hycE at 2843.626 kb on + strand, within hycE at 2843.631 kb on + strand, within hycE at 2843.663 kb on + strand, within hycE at 2843.674 kb on - strand, within hycE at 2843.704 kb on + strand, within hycE at 2843.704 kb on + strand, within hycE at 2843.731 kb on - strand, within hycE at 2843.753 kb on - strand, within hycE at 2843.753 kb on - strand, within hycE at 2843.765 kb on + strand, within hycE at 2843.952 kb on + strand, within hycE at 2844.142 kb on + strand, within hycE at 2844.231 kb on + strand, within hycE at 2844.284 kb on - strand, within hycE at 2844.422 kb on + strand at 2844.422 kb on + strand at 2844.443 kb on - strand at 2844.462 kb on + strand at 2844.470 kb on - strand at 2844.470 kb on - strand at 2844.569 kb on - strand at 2844.576 kb on + strand at 2844.607 kb on - strand, within hycD at 2844.761 kb on - strand, within hycD at 2844.789 kb on - strand, within hycD at 2844.937 kb on + strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.984 kb on + strand, within hycD at 2845.140 kb on - strand, within hycD at 2845.212 kb on - strand, within hycD at 2845.231 kb on - strand, within hycD at 2845.269 kb on - strand, within hycD at 2845.320 kb on + strand, within hycD at 2845.428 kb on - strand at 2845.428 kb on - strand at 2845.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-2-butenol 1.25 vol% remove 2,841,821 - hycG b2719 0.46 -0.2 2,841,861 - hycG b2719 0.52 -0.3 2,841,870 - hycG b2719 0.53 +0.8 2,842,019 + hycG b2719 0.72 -0.6 2,842,047 - hycG b2719 0.76 -1.1 2,842,093 - hycG b2719 0.82 +0.0 2,842,093 - hycG b2719 0.82 -0.1 2,842,113 + hycG b2719 0.84 +0.1 2,842,245 + -0.5 2,842,253 - +1.5 2,842,346 + hycF b2720 0.21 +0.0 2,842,367 - hycF b2720 0.25 +0.6 2,842,377 + hycF b2720 0.27 -0.1 2,842,384 - hycF b2720 0.28 -0.3 2,842,490 + hycF b2720 0.48 -0.3 2,842,523 - hycF b2720 0.54 -1.1 2,842,523 - hycF b2720 0.54 +0.5 2,842,545 + hycF b2720 0.58 -0.0 2,842,584 + hycF b2720 0.65 -0.9 2,842,584 + hycF b2720 0.65 +0.9 2,842,584 + hycF b2720 0.65 -0.1 2,842,599 + hycF b2720 0.68 -0.6 2,842,773 - +0.5 2,842,853 - +0.1 2,842,890 + -0.9 2,842,890 + -0.2 2,842,890 + -0.3 2,843,106 - hycE b2721 0.19 +0.2 2,843,139 + hycE b2721 0.21 +0.9 2,843,144 + hycE b2721 0.21 -1.6 2,843,147 - hycE b2721 0.21 +0.0 2,843,254 + hycE b2721 0.27 +0.1 2,843,407 - hycE b2721 0.36 -0.2 2,843,459 + hycE b2721 0.39 +0.5 2,843,564 + hycE b2721 0.46 -0.7 2,843,572 - hycE b2721 0.46 +0.5 2,843,600 + hycE b2721 0.48 -0.3 2,843,600 + hycE b2721 0.48 +0.5 2,843,626 + hycE b2721 0.49 +0.3 2,843,631 + hycE b2721 0.50 +0.1 2,843,663 + hycE b2721 0.51 +1.2 2,843,674 - hycE b2721 0.52 +0.5 2,843,704 + hycE b2721 0.54 -0.3 2,843,704 + hycE b2721 0.54 +0.6 2,843,731 - hycE b2721 0.55 -0.1 2,843,753 - hycE b2721 0.57 +0.3 2,843,753 - hycE b2721 0.57 +0.6 2,843,765 + hycE b2721 0.57 +0.9 2,843,952 + hycE b2721 0.68 -0.0 2,844,142 + hycE b2721 0.79 -0.1 2,844,231 + hycE b2721 0.85 +1.1 2,844,284 - hycE b2721 0.88 -0.2 2,844,422 + -0.3 2,844,422 + +1.1 2,844,443 - +0.4 2,844,462 + +0.0 2,844,470 - -0.6 2,844,470 - -0.4 2,844,569 - +0.5 2,844,576 + +0.6 2,844,607 - hycD b2722 0.10 +0.5 2,844,761 - hycD b2722 0.27 +0.6 2,844,789 - hycD b2722 0.30 +0.3 2,844,937 + hycD b2722 0.46 +0.6 2,844,945 - hycD b2722 0.47 -1.8 2,844,945 - hycD b2722 0.47 +0.8 2,844,984 + hycD b2722 0.51 +0.1 2,845,140 - hycD b2722 0.68 -0.1 2,845,212 - hycD b2722 0.76 -0.2 2,845,231 - hycD b2722 0.78 -1.3 2,845,269 - hycD b2722 0.82 +0.2 2,845,320 + hycD b2722 0.88 -0.1 2,845,428 - -0.2 2,845,428 - +0.7 2,845,487 + +0.3
Or see this region's nucleotide sequence