Strain Fitness in Escherichia coli BW25113 around b2206
Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-2-butenol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
2,297,341 | + | napH | b2204 | 0.70 | -0.3 |
2,297,444 | - | napH | b2204 | 0.82 | -1.2 |
2,297,464 | + | napH | b2204 | 0.84 | +0.1 |
2,297,476 | - | napH | b2204 | 0.86 | +0.1 |
2,297,476 | - | napH | b2204 | 0.86 | -0.9 |
2,297,517 | + | -1.3 | |||
2,297,535 | - | -0.0 | |||
2,297,535 | - | -1.0 | |||
2,297,585 | - | +0.1 | |||
2,297,585 | - | +0.1 | |||
2,297,615 | - | +0.1 | |||
2,297,676 | - | napG | b2205 | 0.13 | +0.1 |
2,297,791 | + | napG | b2205 | 0.29 | +0.2 |
2,297,798 | + | napG | b2205 | 0.30 | +0.1 |
2,297,949 | + | napG | b2205 | 0.52 | +0.1 |
2,297,953 | - | napG | b2205 | 0.53 | +0.0 |
2,298,068 | + | napG | b2205 | 0.69 | -0.3 |
2,298,073 | + | napG | b2205 | 0.70 | -0.1 |
2,298,161 | - | napG | b2205 | 0.82 | -0.3 |
2,298,190 | + | napG | b2205 | 0.87 | -0.0 |
2,298,194 | + | napG | b2205 | 0.87 | -0.5 |
2,298,340 | - | +0.1 | |||
2,298,340 | - | +0.0 | |||
2,298,469 | + | -0.0 | |||
2,298,562 | + | napA | b2206 | 0.11 | -0.4 |
2,298,565 | + | napA | b2206 | 0.11 | +0.2 |
2,298,570 | - | napA | b2206 | 0.11 | -0.4 |
2,298,572 | + | napA | b2206 | 0.11 | -0.3 |
2,298,578 | - | napA | b2206 | 0.12 | +0.1 |
2,298,582 | + | napA | b2206 | 0.12 | -1.2 |
2,298,582 | + | napA | b2206 | 0.12 | -0.5 |
2,298,604 | - | napA | b2206 | 0.13 | +0.0 |
2,298,604 | - | napA | b2206 | 0.13 | +0.2 |
2,298,790 | + | napA | b2206 | 0.20 | +0.1 |
2,298,882 | - | napA | b2206 | 0.24 | +0.2 |
2,298,981 | + | napA | b2206 | 0.28 | -0.0 |
2,298,981 | + | napA | b2206 | 0.28 | +0.1 |
2,298,983 | + | napA | b2206 | 0.28 | +0.9 |
2,298,983 | + | napA | b2206 | 0.28 | +0.2 |
2,299,128 | + | napA | b2206 | 0.34 | +0.5 |
2,299,128 | + | napA | b2206 | 0.34 | -0.5 |
2,299,139 | + | napA | b2206 | 0.34 | +0.7 |
2,299,195 | + | napA | b2206 | 0.36 | -0.0 |
2,299,195 | + | napA | b2206 | 0.36 | +0.1 |
2,299,267 | - | napA | b2206 | 0.39 | -1.2 |
2,299,299 | + | napA | b2206 | 0.41 | -0.6 |
2,299,299 | + | napA | b2206 | 0.41 | +0.2 |
2,299,342 | - | napA | b2206 | 0.42 | +1.1 |
2,299,381 | + | napA | b2206 | 0.44 | -0.1 |
2,299,467 | + | napA | b2206 | 0.47 | +0.2 |
2,299,503 | + | napA | b2206 | 0.49 | -0.0 |
2,299,503 | + | napA | b2206 | 0.49 | +0.8 |
2,299,519 | - | napA | b2206 | 0.49 | +0.5 |
2,299,519 | - | napA | b2206 | 0.49 | +0.1 |
2,299,679 | + | napA | b2206 | 0.56 | -0.3 |
2,299,697 | + | napA | b2206 | 0.57 | +0.1 |
2,299,697 | + | napA | b2206 | 0.57 | -0.1 |
2,299,817 | - | napA | b2206 | 0.61 | +0.1 |
2,299,859 | + | napA | b2206 | 0.63 | -0.9 |
2,300,072 | + | napA | b2206 | 0.72 | +1.3 |
2,300,072 | + | napA | b2206 | 0.72 | -0.4 |
2,300,114 | + | napA | b2206 | 0.73 | -0.5 |
2,300,239 | + | napA | b2206 | 0.78 | +0.3 |
2,300,240 | - | napA | b2206 | 0.78 | +0.1 |
2,300,245 | - | napA | b2206 | 0.79 | -0.5 |
2,300,338 | + | napA | b2206 | 0.82 | -0.4 |
2,300,365 | + | napA | b2206 | 0.83 | -0.6 |
2,300,365 | + | napA | b2206 | 0.83 | +0.4 |
2,300,421 | - | napA | b2206 | 0.86 | +1.6 |
2,300,421 | - | napA | b2206 | 0.86 | +0.3 |
2,300,605 | + | +0.1 | |||
2,300,832 | + | napD | b2207 | 0.23 | -0.7 |
2,300,841 | + | napD | b2207 | 0.26 | -1.2 |
2,300,865 | - | napD | b2207 | 0.35 | +0.4 |
2,300,965 | + | napD | b2207 | 0.73 | -0.6 |
2,301,037 | + | +0.4 | |||
2,301,037 | + | -0.5 | |||
2,301,060 | + | +0.3 | |||
2,301,060 | + | -0.0 | |||
2,301,084 | + | napF | b2208 | 0.12 | +0.9 |
2,301,183 | - | napF | b2208 | 0.32 | -0.1 |
2,301,210 | - | napF | b2208 | 0.37 | -1.5 |
2,301,210 | - | napF | b2208 | 0.37 | -2.1 |
2,301,256 | - | napF | b2208 | 0.47 | -0.3 |
2,301,257 | - | napF | b2208 | 0.47 | +0.7 |
2,301,286 | + | napF | b2208 | 0.53 | +0.6 |
2,301,415 | - | napF | b2208 | 0.79 | -0.8 |
2,301,496 | - | -0.4 | |||
2,301,620 | + | +0.1 |
Or see this region's nucleotide sequence