Strain Fitness in Escherichia coli BW25113 around b1849
Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-2-butenol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
1,928,014 | - | -1.2 | |||
1,928,054 | + | +1.5 | |||
1,928,054 | + | +0.3 | |||
1,928,324 | + | yebF | b1847 | 0.75 | +0.6 |
1,928,324 | + | yebF | b1847 | 0.75 | -0.3 |
1,928,426 | + | +0.3 | |||
1,928,426 | + | -1.5 | |||
1,928,449 | - | -1.1 | |||
1,928,449 | - | +0.6 | |||
1,928,740 | - | yebG | b1848 | 0.89 | -0.4 |
1,928,981 | - | +0.5 | |||
1,928,981 | - | -0.6 | |||
1,928,981 | - | -0.9 | |||
1,929,008 | + | +0.5 | |||
1,929,150 | - | purT | b1849 | 0.21 | -0.2 |
1,929,362 | + | purT | b1849 | 0.39 | -0.9 |
1,929,362 | + | purT | b1849 | 0.39 | +1.3 |
1,929,640 | - | purT | b1849 | 0.62 | +1.1 |
1,929,640 | - | purT | b1849 | 0.62 | -0.5 |
1,929,683 | + | purT | b1849 | 0.66 | -0.5 |
1,929,683 | + | purT | b1849 | 0.66 | +0.5 |
1,929,759 | - | purT | b1849 | 0.72 | +0.0 |
1,929,800 | + | purT | b1849 | 0.76 | -0.7 |
1,930,003 | + | +0.0 | |||
1,930,263 | + | eda | b1850 | 0.19 | -0.1 |
1,930,411 | - | eda | b1850 | 0.42 | +0.3 |
1,930,626 | - | eda | b1850 | 0.76 | -0.7 |
1,930,626 | - | eda | b1850 | 0.76 | +0.1 |
1,930,833 | + | -1.0 | |||
1,930,841 | - | +0.2 | |||
1,930,843 | + | +0.2 | |||
1,930,843 | + | +0.1 | |||
1,930,988 | + | -1.4 | |||
1,931,044 | - | edd | b1851 | 0.13 | -0.8 |
1,931,065 | - | edd | b1851 | 0.14 | +0.7 |
1,931,065 | - | edd | b1851 | 0.14 | +0.7 |
Or see this region's nucleotide sequence