Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sufD and sufC overlap by 26 nucleotides sufC and ynhE are separated by 9 nucleotides ynhE and sufA are separated by 8 nucleotides sufA and rydB are separated by 326 nucleotides rydB and ydiH are separated by 153 nucleotides
b1681: sufD - component of SufBCD complex (NCBI), at 1,758,544 to 1,759,815
sufD
b1682: sufC - cysteine desulfurase ATPase component (NCBI), at 1,759,790 to 1,760,536
sufC
b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033
ynhE
b1684: sufA - iron-sulfur cluster assembly scaffold protein (NCBI), at 1,762,042 to 1,762,410
sufA
b4430: rydB - regulatory sRNA (NCBI), at 1,762,737 to 1,762,804
rydB
b1685: ydiH - predicted protein (RefSeq), at 1,762,958 to 1,763,146
ydiH
Position (kb)
1760
1761
1762
1763 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1759.576 kb on - strand, within sufD at 1759.578 kb on - strand, within sufD at 1759.578 kb on - strand, within sufD at 1759.590 kb on - strand, within sufD at 1759.590 kb on - strand, within sufD at 1759.624 kb on + strand, within sufD at 1759.624 kb on + strand, within sufD at 1759.806 kb on - strand at 1759.806 kb on - strand at 1759.812 kb on + strand at 1759.812 kb on + strand at 1759.877 kb on + strand, within sufC at 1759.902 kb on - strand, within sufC at 1759.902 kb on - strand, within sufC at 1759.907 kb on - strand, within sufC at 1759.944 kb on + strand, within sufC at 1759.944 kb on + strand, within sufC at 1759.999 kb on + strand, within sufC at 1760.009 kb on - strand, within sufC at 1760.777 kb on - strand, within ynhE at 1760.788 kb on - strand, within ynhE at 1760.968 kb on - strand, within ynhE at 1760.968 kb on - strand, within ynhE at 1761.252 kb on - strand, within ynhE at 1761.371 kb on + strand, within ynhE at 1761.462 kb on + strand, within ynhE at 1761.662 kb on - strand, within ynhE at 1761.706 kb on - strand, within ynhE at 1761.706 kb on - strand, within ynhE at 1761.706 kb on - strand, within ynhE at 1761.721 kb on - strand, within ynhE at 1761.721 kb on - strand, within ynhE at 1761.867 kb on + strand, within ynhE at 1761.868 kb on - strand, within ynhE at 1762.235 kb on - strand, within sufA at 1762.235 kb on - strand, within sufA at 1762.245 kb on - strand, within sufA at 1762.437 kb on + strand at 1762.521 kb on + strand at 1762.546 kb on - strand at 1762.891 kb on - strand at 1762.891 kb on - strand at 1762.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-2-butenol 1.25 vol% remove 1,759,576 - sufD b1681 0.81 -2.2 1,759,578 - sufD b1681 0.81 -0.6 1,759,578 - sufD b1681 0.81 -0.8 1,759,590 - sufD b1681 0.82 -3.1 1,759,590 - sufD b1681 0.82 +0.6 1,759,624 + sufD b1681 0.85 -1.7 1,759,624 + sufD b1681 0.85 -2.4 1,759,806 - -0.9 1,759,806 - -1.9 1,759,812 + -1.5 1,759,812 + -1.7 1,759,877 + sufC b1682 0.12 -1.6 1,759,902 - sufC b1682 0.15 -0.3 1,759,902 - sufC b1682 0.15 -3.1 1,759,907 - sufC b1682 0.16 -1.4 1,759,944 + sufC b1682 0.21 -0.1 1,759,944 + sufC b1682 0.21 -0.5 1,759,999 + sufC b1682 0.28 -2.3 1,760,009 - sufC b1682 0.29 -1.6 1,760,777 - ynhE b1683 0.16 -0.7 1,760,788 - ynhE b1683 0.16 -1.4 1,760,968 - ynhE b1683 0.28 -0.7 1,760,968 - ynhE b1683 0.28 -1.6 1,761,252 - ynhE b1683 0.47 -0.8 1,761,371 + ynhE b1683 0.55 -1.2 1,761,462 + ynhE b1683 0.62 -1.3 1,761,662 - ynhE b1683 0.75 -1.3 1,761,706 - ynhE b1683 0.78 -1.4 1,761,706 - ynhE b1683 0.78 -0.6 1,761,706 - ynhE b1683 0.78 -1.8 1,761,721 - ynhE b1683 0.79 -1.5 1,761,721 - ynhE b1683 0.79 -0.1 1,761,867 + ynhE b1683 0.89 -0.5 1,761,868 - ynhE b1683 0.89 -1.6 1,762,235 - sufA b1684 0.52 -0.1 1,762,235 - sufA b1684 0.52 -2.3 1,762,245 - sufA b1684 0.55 -0.1 1,762,437 + +0.1 1,762,521 + +0.4 1,762,546 - -0.1 1,762,891 - -0.2 1,762,891 - -1.1 1,762,904 - -0.6
Or see this region's nucleotide sequence