Strain Fitness in Escherichia coli BW25113 around b0789
Experiment: 3-methyl-2-butenol 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3-methyl-2-butenol 1.25 vol% |
---|---|---|---|---|---|
remove | |||||
820,826 | - | -0.7 | |||
820,826 | - | -0.4 | |||
820,826 | - | +0.6 | |||
820,926 | - | ybhN | b0788 | 0.17 | +0.1 |
821,003 | + | ybhN | b0788 | 0.25 | +0.2 |
821,004 | - | ybhN | b0788 | 0.25 | -0.1 |
821,158 | - | ybhN | b0788 | 0.41 | +0.2 |
821,314 | - | ybhN | b0788 | 0.57 | +1.6 |
821,329 | + | ybhN | b0788 | 0.59 | -1.4 |
821,333 | - | ybhN | b0788 | 0.59 | +0.3 |
821,435 | - | ybhN | b0788 | 0.70 | -0.1 |
821,615 | - | ybhN | b0788 | 0.89 | +0.7 |
821,666 | - | +0.4 | |||
821,850 | - | ybhO | b0789 | 0.10 | +0.5 |
821,898 | - | ybhO | b0789 | 0.14 | -0.3 |
821,907 | - | ybhO | b0789 | 0.15 | +0.3 |
822,100 | + | ybhO | b0789 | 0.31 | +3.2 |
822,100 | + | ybhO | b0789 | 0.31 | +0.2 |
822,155 | - | ybhO | b0789 | 0.35 | -1.2 |
822,188 | - | ybhO | b0789 | 0.38 | -1.0 |
822,188 | - | ybhO | b0789 | 0.38 | -1.0 |
822,273 | + | ybhO | b0789 | 0.44 | -0.5 |
822,328 | - | ybhO | b0789 | 0.49 | -0.0 |
822,328 | - | ybhO | b0789 | 0.49 | +1.2 |
822,553 | + | ybhO | b0789 | 0.67 | +0.3 |
822,553 | + | ybhO | b0789 | 0.67 | +0.2 |
822,780 | + | ybhO | b0789 | 0.85 | -0.1 |
822,780 | + | ybhO | b0789 | 0.85 | -0.8 |
822,849 | + | -0.2 | |||
822,891 | - | +0.9 | |||
823,224 | + | ybhP | b0790 | 0.35 | +0.5 |
823,224 | + | ybhP | b0790 | 0.35 | +0.8 |
823,296 | - | ybhP | b0790 | 0.44 | -0.2 |
823,296 | - | ybhP | b0790 | 0.44 | -0.7 |
823,302 | - | ybhP | b0790 | 0.45 | +0.8 |
823,331 | + | ybhP | b0790 | 0.49 | +0.2 |
823,346 | + | ybhP | b0790 | 0.51 | +0.4 |
823,405 | + | ybhP | b0790 | 0.59 | -1.1 |
823,434 | - | ybhP | b0790 | 0.62 | +0.8 |
823,454 | - | ybhP | b0790 | 0.65 | -0.7 |
823,604 | - | ybhP | b0790 | 0.85 | -1.2 |
823,653 | - | -0.3 | |||
823,850 | + | +0.4 | |||
823,893 | - | -0.8 | |||
823,947 | + | ybhQ | b0791 | 0.23 | -1.0 |
823,961 | - | ybhQ | b0791 | 0.26 | +0.3 |
Or see this region's nucleotide sequence