Strain Fitness in Escherichia coli BW25113 around b0789

Experiment: 3-methyl-2-butenol 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybhM and ybhN are separated by 35 nucleotidesybhN and ybhO overlap by 1 nucleotidesybhO and ybhP overlap by 4 nucleotidesybhP and ybhQ are separated by 132 nucleotides b0787: ybhM - conserved inner membrane protein (NCBI), at 820,016 to 820,729 ybhM b0788: ybhN - conserved inner membrane protein (NCBI), at 820,765 to 821,721 ybhN b0789: ybhO - cardiolipin synthase 2 (NCBI), at 821,721 to 822,962 ybhO b0790: ybhP - predicted DNase (NCBI), at 822,959 to 823,720 ybhP b0791: ybhQ - predicted inner membrane protein (NCBI), at 823,853 to 824,263 ybhQ Position (kb) 821 822 823Strain fitness (log2 ratio) -1 0 1 2 3at 820.826 kb on - strandat 820.826 kb on - strandat 820.826 kb on - strandat 820.926 kb on - strand, within ybhNat 821.003 kb on + strand, within ybhNat 821.004 kb on - strand, within ybhNat 821.158 kb on - strand, within ybhNat 821.314 kb on - strand, within ybhNat 821.329 kb on + strand, within ybhNat 821.333 kb on - strand, within ybhNat 821.435 kb on - strand, within ybhNat 821.615 kb on - strand, within ybhNat 821.666 kb on - strandat 821.850 kb on - strand, within ybhOat 821.898 kb on - strand, within ybhOat 821.907 kb on - strand, within ybhOat 822.100 kb on + strand, within ybhOat 822.100 kb on + strand, within ybhOat 822.155 kb on - strand, within ybhOat 822.188 kb on - strand, within ybhOat 822.188 kb on - strand, within ybhOat 822.273 kb on + strand, within ybhOat 822.328 kb on - strand, within ybhOat 822.328 kb on - strand, within ybhOat 822.553 kb on + strand, within ybhOat 822.553 kb on + strand, within ybhOat 822.780 kb on + strand, within ybhOat 822.780 kb on + strand, within ybhOat 822.849 kb on + strandat 822.891 kb on - strandat 823.224 kb on + strand, within ybhPat 823.224 kb on + strand, within ybhPat 823.296 kb on - strand, within ybhPat 823.296 kb on - strand, within ybhPat 823.302 kb on - strand, within ybhPat 823.331 kb on + strand, within ybhPat 823.346 kb on + strand, within ybhPat 823.405 kb on + strand, within ybhPat 823.434 kb on - strand, within ybhPat 823.454 kb on - strand, within ybhPat 823.604 kb on - strand, within ybhPat 823.653 kb on - strandat 823.850 kb on + strandat 823.893 kb on - strandat 823.947 kb on + strand, within ybhQat 823.961 kb on - strand, within ybhQ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-2-butenol 1.25 vol%
remove
820,826 - -0.7
820,826 - -0.4
820,826 - +0.6
820,926 - ybhN b0788 0.17 +0.1
821,003 + ybhN b0788 0.25 +0.2
821,004 - ybhN b0788 0.25 -0.1
821,158 - ybhN b0788 0.41 +0.2
821,314 - ybhN b0788 0.57 +1.6
821,329 + ybhN b0788 0.59 -1.4
821,333 - ybhN b0788 0.59 +0.3
821,435 - ybhN b0788 0.70 -0.1
821,615 - ybhN b0788 0.89 +0.7
821,666 - +0.4
821,850 - ybhO b0789 0.10 +0.5
821,898 - ybhO b0789 0.14 -0.3
821,907 - ybhO b0789 0.15 +0.3
822,100 + ybhO b0789 0.31 +3.2
822,100 + ybhO b0789 0.31 +0.2
822,155 - ybhO b0789 0.35 -1.2
822,188 - ybhO b0789 0.38 -1.0
822,188 - ybhO b0789 0.38 -1.0
822,273 + ybhO b0789 0.44 -0.5
822,328 - ybhO b0789 0.49 -0.0
822,328 - ybhO b0789 0.49 +1.2
822,553 + ybhO b0789 0.67 +0.3
822,553 + ybhO b0789 0.67 +0.2
822,780 + ybhO b0789 0.85 -0.1
822,780 + ybhO b0789 0.85 -0.8
822,849 + -0.2
822,891 - +0.9
823,224 + ybhP b0790 0.35 +0.5
823,224 + ybhP b0790 0.35 +0.8
823,296 - ybhP b0790 0.44 -0.2
823,296 - ybhP b0790 0.44 -0.7
823,302 - ybhP b0790 0.45 +0.8
823,331 + ybhP b0790 0.49 +0.2
823,346 + ybhP b0790 0.51 +0.4
823,405 + ybhP b0790 0.59 -1.1
823,434 - ybhP b0790 0.62 +0.8
823,454 - ybhP b0790 0.65 -0.7
823,604 - ybhP b0790 0.85 -1.2
823,653 - -0.3
823,850 + +0.4
823,893 - -0.8
823,947 + ybhQ b0791 0.23 -1.0
823,961 - ybhQ b0791 0.26 +0.3

Or see this region's nucleotide sequence