Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4808 and Psyr_4809 are separated by 202 nucleotides Psyr_4809 and Psyr_4810 are separated by 278 nucleotides Psyr_4810 and Psyr_4811 are separated by 0 nucleotides
Psyr_4808: Psyr_4808 - conserved hypothetical protein, at 5,703,663 to 5,703,926
_4808
Psyr_4809: Psyr_4809 - conserved hypothetical protein, at 5,704,129 to 5,704,458
_4809
Psyr_4810: Psyr_4810 - sodium/proton antiporter, CPA1 family, at 5,704,737 to 5,705,996
_4810
Psyr_4811: Psyr_4811 - transcriptional regulator, AraC family, at 5,705,997 to 5,706,944
_4811
Position (kb) 5704
5705
5706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5703.745 kb on - strand, within Psyr_4808 at 5703.745 kb on - strand, within Psyr_4808 at 5703.826 kb on - strand, within Psyr_4808 at 5703.908 kb on + strand at 5703.908 kb on + strand at 5703.908 kb on + strand at 5703.909 kb on - strand at 5703.909 kb on - strand at 5703.911 kb on + strand at 5703.912 kb on - strand at 5703.989 kb on + strand at 5703.990 kb on - strand at 5703.990 kb on - strand at 5704.017 kb on + strand at 5704.017 kb on + strand at 5704.017 kb on + strand at 5704.017 kb on + strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.056 kb on + strand at 5704.056 kb on + strand at 5704.151 kb on + strand at 5704.151 kb on + strand at 5704.151 kb on + strand at 5704.192 kb on + strand, within Psyr_4809 at 5704.192 kb on + strand, within Psyr_4809 at 5704.193 kb on - strand, within Psyr_4809 at 5704.193 kb on - strand, within Psyr_4809 at 5704.193 kb on - strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.298 kb on - strand, within Psyr_4809 at 5704.303 kb on + strand, within Psyr_4809 at 5704.303 kb on + strand, within Psyr_4809 at 5704.304 kb on - strand, within Psyr_4809 at 5704.387 kb on + strand, within Psyr_4809 at 5704.387 kb on + strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.665 kb on + strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.718 kb on + strand at 5704.760 kb on + strand at 5704.761 kb on - strand at 5704.761 kb on - strand at 5704.785 kb on + strand at 5704.785 kb on + strand at 5704.785 kb on + strand at 5704.785 kb on + strand at 5704.786 kb on - strand at 5704.786 kb on - strand at 5704.794 kb on + strand at 5704.794 kb on + strand at 5704.794 kb on + strand at 5704.794 kb on + strand at 5704.795 kb on - strand at 5705.017 kb on - strand, within Psyr_4810 at 5705.089 kb on - strand, within Psyr_4810 at 5705.130 kb on + strand, within Psyr_4810 at 5705.130 kb on + strand, within Psyr_4810 at 5705.131 kb on - strand, within Psyr_4810 at 5705.397 kb on + strand, within Psyr_4810 at 5705.504 kb on + strand, within Psyr_4810 at 5705.580 kb on + strand, within Psyr_4810 at 5705.580 kb on + strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5706.179 kb on + strand, within Psyr_4811 at 5706.293 kb on - strand, within Psyr_4811 at 5706.346 kb on + strand, within Psyr_4811 at 5706.346 kb on + strand, within Psyr_4811 at 5706.346 kb on + strand, within Psyr_4811 at 5706.346 kb on + strand, within Psyr_4811 at 5706.346 kb on + strand, within Psyr_4811 at 5706.347 kb on - strand, within Psyr_4811 at 5706.347 kb on - strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.796 kb on + strand, within Psyr_4811 at 5706.797 kb on - strand, within Psyr_4811 at 5706.843 kb on - strand, within Psyr_4811 at 5706.911 kb on + strand at 5706.911 kb on + strand at 5706.912 kb on - strand at 5706.918 kb on - strand at 5706.944 kb on + strand at 5706.944 kb on + strand at 5706.944 kb on + strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.968 kb on + strand at 5706.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,703,745 - Psyr_4808 0.31 -0.9 5,703,745 - Psyr_4808 0.31 -1.4 5,703,826 - Psyr_4808 0.62 -1.8 5,703,908 + -0.2 5,703,908 + +0.4 5,703,908 + -0.7 5,703,909 - +0.8 5,703,909 - -1.8 5,703,911 + -0.6 5,703,912 - -0.9 5,703,989 + +1.8 5,703,990 - -0.1 5,703,990 - -0.6 5,704,017 + -0.5 5,704,017 + -0.2 5,704,017 + +0.4 5,704,017 + -0.4 5,704,018 - -0.2 5,704,018 - -0.9 5,704,018 - -0.8 5,704,018 - -0.1 5,704,056 + +0.1 5,704,056 + +0.4 5,704,151 + +0.5 5,704,151 + -0.2 5,704,151 + +0.3 5,704,192 + Psyr_4809 0.19 -0.4 5,704,192 + Psyr_4809 0.19 -0.8 5,704,193 - Psyr_4809 0.19 +0.0 5,704,193 - Psyr_4809 0.19 +0.5 5,704,193 - Psyr_4809 0.19 -0.8 5,704,255 + Psyr_4809 0.38 -2.3 5,704,255 + Psyr_4809 0.38 +0.1 5,704,255 + Psyr_4809 0.38 -0.4 5,704,255 + Psyr_4809 0.38 -0.2 5,704,256 - Psyr_4809 0.38 +1.5 5,704,256 - Psyr_4809 0.38 +0.2 5,704,256 - Psyr_4809 0.38 +1.4 5,704,256 - Psyr_4809 0.38 +1.2 5,704,256 - Psyr_4809 0.38 -0.4 5,704,256 - Psyr_4809 0.38 -0.2 5,704,297 + Psyr_4809 0.51 -0.1 5,704,297 + Psyr_4809 0.51 +1.0 5,704,297 + Psyr_4809 0.51 -0.0 5,704,298 - Psyr_4809 0.51 -2.8 5,704,303 + Psyr_4809 0.53 -0.7 5,704,303 + Psyr_4809 0.53 +0.5 5,704,304 - Psyr_4809 0.53 -1.9 5,704,387 + Psyr_4809 0.78 -0.3 5,704,387 + Psyr_4809 0.78 -0.5 5,704,388 - Psyr_4809 0.78 -0.2 5,704,388 - Psyr_4809 0.78 -0.2 5,704,490 + +0.6 5,704,490 + +0.2 5,704,490 + -0.5 5,704,490 + +0.3 5,704,491 - +1.1 5,704,491 - +0.7 5,704,491 - +1.5 5,704,491 - +0.0 5,704,491 - -0.6 5,704,491 - -1.8 5,704,665 + -0.1 5,704,666 - -1.1 5,704,666 - -0.8 5,704,666 - +0.3 5,704,666 - +0.0 5,704,718 + -0.8 5,704,760 + -1.3 5,704,761 - +0.1 5,704,761 - +0.4 5,704,785 + -1.5 5,704,785 + +0.1 5,704,785 + +1.0 5,704,785 + +0.0 5,704,786 - +0.1 5,704,786 - -2.1 5,704,794 + +0.0 5,704,794 + +0.3 5,704,794 + +0.8 5,704,794 + +1.9 5,704,795 - -0.5 5,705,017 - Psyr_4810 0.22 -1.6 5,705,089 - Psyr_4810 0.28 +0.5 5,705,130 + Psyr_4810 0.31 +1.4 5,705,130 + Psyr_4810 0.31 +0.2 5,705,131 - Psyr_4810 0.31 +0.4 5,705,397 + Psyr_4810 0.52 +0.3 5,705,504 + Psyr_4810 0.61 +0.4 5,705,580 + Psyr_4810 0.67 -0.5 5,705,580 + Psyr_4810 0.67 -0.3 5,705,581 - Psyr_4810 0.67 -0.5 5,705,581 - Psyr_4810 0.67 -1.6 5,705,581 - Psyr_4810 0.67 +0.6 5,705,892 + +0.4 5,705,892 + -2.1 5,705,892 + +1.3 5,705,892 + -0.1 5,705,892 + -0.4 5,705,892 + -0.3 5,705,892 + -0.5 5,705,892 + -1.0 5,705,892 + +0.4 5,705,892 + -0.9 5,705,892 + -0.5 5,705,892 + +0.2 5,705,893 - -0.7 5,705,893 - -2.8 5,705,893 - -0.1 5,705,893 - -0.0 5,705,893 - +0.5 5,706,179 + Psyr_4811 0.19 -1.0 5,706,293 - Psyr_4811 0.31 -0.3 5,706,346 + Psyr_4811 0.37 -1.1 5,706,346 + Psyr_4811 0.37 -1.3 5,706,346 + Psyr_4811 0.37 -2.5 5,706,346 + Psyr_4811 0.37 -0.4 5,706,346 + Psyr_4811 0.37 +1.1 5,706,347 - Psyr_4811 0.37 -0.2 5,706,347 - Psyr_4811 0.37 -0.7 5,706,706 + Psyr_4811 0.75 -0.3 5,706,706 + Psyr_4811 0.75 -0.2 5,706,706 + Psyr_4811 0.75 -0.0 5,706,706 + Psyr_4811 0.75 -0.2 5,706,707 - Psyr_4811 0.75 -0.0 5,706,707 - Psyr_4811 0.75 -0.3 5,706,796 + Psyr_4811 0.84 -0.5 5,706,797 - Psyr_4811 0.84 +0.1 5,706,843 - Psyr_4811 0.89 -0.5 5,706,911 + +0.3 5,706,911 + +0.6 5,706,912 - +1.4 5,706,918 - -0.0 5,706,944 + -0.4 5,706,944 + +0.9 5,706,944 + -1.1 5,706,945 - -0.2 5,706,945 - +0.5 5,706,945 - +0.8 5,706,945 - +0.6 5,706,968 + +0.4 5,706,969 - +0.1
Or see this region's nucleotide sequence