Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4742

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4740 and Psyr_4741 are separated by 51 nucleotidesPsyr_4741 and Psyr_4742 are separated by 114 nucleotidesPsyr_4742 and Psyr_4743 are separated by 80 nucleotidesPsyr_4743 and Psyr_4744 are separated by 147 nucleotides Psyr_4740: Psyr_4740 - thiazole-phosphate synthase, at 5,619,406 to 5,620,200 _4740 Psyr_4741: Psyr_4741 - sulfur carrier protein ThiS, at 5,620,252 to 5,620,452 _4741 Psyr_4742: Psyr_4742 - Protein of unknown function DUF423, at 5,620,567 to 5,620,947 _4742 Psyr_4743: Psyr_4743 - Glycosyl transferase, family 51, at 5,621,028 to 5,621,738 _4743 Psyr_4744: Psyr_4744 - hypothetical protein, at 5,621,886 to 5,622,131 _4744 Position (kb) 5620 5621Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5619.782 kb on + strand, within Psyr_4740at 5619.782 kb on + strand, within Psyr_4740at 5619.782 kb on + strand, within Psyr_4740at 5619.783 kb on - strand, within Psyr_4740at 5619.783 kb on - strand, within Psyr_4740at 5619.976 kb on + strand, within Psyr_4740at 5619.977 kb on - strand, within Psyr_4740at 5619.977 kb on - strand, within Psyr_4740at 5619.983 kb on + strand, within Psyr_4740at 5620.118 kb on + strand, within Psyr_4740at 5620.118 kb on + strand, within Psyr_4740at 5620.118 kb on + strand, within Psyr_4740at 5620.118 kb on + strand, within Psyr_4740at 5620.118 kb on + strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.119 kb on - strand, within Psyr_4740at 5620.213 kb on + strandat 5620.213 kb on + strandat 5620.253 kb on + strandat 5620.254 kb on - strandat 5620.489 kb on + strandat 5620.713 kb on + strand, within Psyr_4742at 5620.714 kb on - strand, within Psyr_4742at 5620.814 kb on + strand, within Psyr_4742at 5620.845 kb on - strand, within Psyr_4742at 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.989 kb on + strandat 5620.990 kb on - strandat 5620.990 kb on - strandat 5620.990 kb on - strandat 5620.990 kb on - strandat 5620.990 kb on - strandat 5620.990 kb on - strandat 5620.992 kb on - strandat 5620.992 kb on - strandat 5621.027 kb on + strandat 5621.027 kb on + strandat 5621.028 kb on - strandat 5621.028 kb on - strandat 5621.028 kb on - strandat 5621.039 kb on + strandat 5621.039 kb on + strandat 5621.039 kb on + strandat 5621.040 kb on - strandat 5621.155 kb on + strand, within Psyr_4743at 5621.156 kb on - strand, within Psyr_4743at 5621.156 kb on - strand, within Psyr_4743at 5621.156 kb on - strand, within Psyr_4743at 5621.156 kb on - strand, within Psyr_4743at 5621.403 kb on + strand, within Psyr_4743at 5621.403 kb on + strand, within Psyr_4743at 5621.404 kb on - strand, within Psyr_4743at 5621.449 kb on + strand, within Psyr_4743at 5621.449 kb on + strand, within Psyr_4743at 5621.449 kb on + strand, within Psyr_4743at 5621.449 kb on + strand, within Psyr_4743at 5621.449 kb on + strand, within Psyr_4743at 5621.450 kb on - strand, within Psyr_4743at 5621.450 kb on - strand, within Psyr_4743at 5621.450 kb on - strand, within Psyr_4743at 5621.481 kb on + strand, within Psyr_4743at 5621.482 kb on - strand, within Psyr_4743at 5621.482 kb on - strand, within Psyr_4743at 5621.482 kb on - strand, within Psyr_4743at 5621.482 kb on - strand, within Psyr_4743at 5621.482 kb on - strand, within Psyr_4743at 5621.586 kb on + strand, within Psyr_4743at 5621.586 kb on + strand, within Psyr_4743at 5621.587 kb on - strand, within Psyr_4743at 5621.644 kb on - strand, within Psyr_4743at 5621.644 kb on - strand, within Psyr_4743at 5621.644 kb on - strand, within Psyr_4743at 5621.703 kb on + strandat 5621.704 kb on - strandat 5621.773 kb on + strandat 5621.774 kb on - strandat 5621.774 kb on - strandat 5621.774 kb on - strandat 5621.774 kb on - strandat 5621.802 kb on - strandat 5621.802 kb on - strandat 5621.919 kb on + strand, within Psyr_4744at 5621.919 kb on + strand, within Psyr_4744at 5621.919 kb on + strand, within Psyr_4744

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,619,782 + Psyr_4740 0.47 -1.7
5,619,782 + Psyr_4740 0.47 -2.7
5,619,782 + Psyr_4740 0.47 -1.8
5,619,783 - Psyr_4740 0.47 -3.8
5,619,783 - Psyr_4740 0.47 -1.6
5,619,976 + Psyr_4740 0.72 -2.8
5,619,977 - Psyr_4740 0.72 -3.6
5,619,977 - Psyr_4740 0.72 -3.0
5,619,983 + Psyr_4740 0.73 -3.9
5,620,118 + Psyr_4740 0.90 -3.3
5,620,118 + Psyr_4740 0.90 -2.1
5,620,118 + Psyr_4740 0.90 -3.9
5,620,118 + Psyr_4740 0.90 -2.1
5,620,118 + Psyr_4740 0.90 +0.2
5,620,119 - Psyr_4740 0.90 -3.4
5,620,119 - Psyr_4740 0.90 -4.1
5,620,119 - Psyr_4740 0.90 -3.4
5,620,119 - Psyr_4740 0.90 -2.4
5,620,119 - Psyr_4740 0.90 -3.6
5,620,119 - Psyr_4740 0.90 -2.6
5,620,119 - Psyr_4740 0.90 -4.3
5,620,119 - Psyr_4740 0.90 -2.4
5,620,213 + -1.4
5,620,213 + -2.2
5,620,253 + -2.2
5,620,254 - +0.5
5,620,489 + -4.0
5,620,713 + Psyr_4742 0.38 +0.3
5,620,714 - Psyr_4742 0.39 +0.1
5,620,814 + Psyr_4742 0.65 +2.8
5,620,845 - Psyr_4742 0.73 +0.6
5,620,989 + -1.0
5,620,989 + +0.2
5,620,989 + +1.4
5,620,989 + -0.8
5,620,989 + -0.8
5,620,989 + -0.7
5,620,989 + +0.2
5,620,989 + -0.0
5,620,989 + -0.9
5,620,990 - -0.0
5,620,990 - +0.3
5,620,990 - +0.1
5,620,990 - +0.1
5,620,990 - -0.3
5,620,990 - -0.4
5,620,992 - +0.5
5,620,992 - +0.8
5,621,027 + +0.8
5,621,027 + -0.6
5,621,028 - -0.7
5,621,028 - -0.5
5,621,028 - +0.8
5,621,039 + +1.1
5,621,039 + +0.1
5,621,039 + -0.7
5,621,040 - +0.1
5,621,155 + Psyr_4743 0.18 +1.1
5,621,156 - Psyr_4743 0.18 +1.0
5,621,156 - Psyr_4743 0.18 +0.8
5,621,156 - Psyr_4743 0.18 -0.4
5,621,156 - Psyr_4743 0.18 +0.1
5,621,403 + Psyr_4743 0.53 -0.3
5,621,403 + Psyr_4743 0.53 -0.3
5,621,404 - Psyr_4743 0.53 +0.0
5,621,449 + Psyr_4743 0.59 +0.1
5,621,449 + Psyr_4743 0.59 +1.2
5,621,449 + Psyr_4743 0.59 -0.2
5,621,449 + Psyr_4743 0.59 +0.2
5,621,449 + Psyr_4743 0.59 -1.2
5,621,450 - Psyr_4743 0.59 -0.7
5,621,450 - Psyr_4743 0.59 -1.0
5,621,450 - Psyr_4743 0.59 +0.4
5,621,481 + Psyr_4743 0.64 +0.9
5,621,482 - Psyr_4743 0.64 +0.3
5,621,482 - Psyr_4743 0.64 -0.6
5,621,482 - Psyr_4743 0.64 -0.7
5,621,482 - Psyr_4743 0.64 -0.8
5,621,482 - Psyr_4743 0.64 -1.2
5,621,586 + Psyr_4743 0.78 -2.0
5,621,586 + Psyr_4743 0.78 +0.9
5,621,587 - Psyr_4743 0.79 -0.2
5,621,644 - Psyr_4743 0.87 -0.3
5,621,644 - Psyr_4743 0.87 +1.0
5,621,644 - Psyr_4743 0.87 -0.2
5,621,703 + +1.6
5,621,704 - +0.4
5,621,773 + +0.8
5,621,774 - -0.1
5,621,774 - +0.0
5,621,774 - +0.5
5,621,774 - +1.5
5,621,802 - -0.0
5,621,802 - -0.3
5,621,919 + Psyr_4744 0.13 +0.3
5,621,919 + Psyr_4744 0.13 +2.6
5,621,919 + Psyr_4744 0.13 +0.0

Or see this region's nucleotide sequence