Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4683 and Psyr_4684 are separated by 24 nucleotides Psyr_4684 and Psyr_4685 overlap by 8 nucleotides Psyr_4685 and Psyr_4686 overlap by 8 nucleotides
Psyr_4683: Psyr_4683 - dethiobiotin synthase, at 5,551,356 to 5,552,036
_4683
Psyr_4684: Psyr_4684 - biotin synthesis protein BioC, at 5,552,061 to 5,552,870
_4684
Psyr_4685: Psyr_4685 - bioH protein, at 5,552,863 to 5,553,594
_4685
Psyr_4686: Psyr_4686 - 8-amino-7-oxononanoate synthase, at 5,553,587 to 5,554,777
_4686
Position (kb) 5552
5553
5554 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5552.023 kb on + strand at 5552.024 kb on - strand at 5552.024 kb on - strand at 5552.024 kb on - strand at 5552.095 kb on + strand at 5552.095 kb on + strand at 5552.096 kb on - strand at 5552.096 kb on - strand at 5552.096 kb on - strand at 5552.134 kb on + strand at 5552.392 kb on + strand, within Psyr_4684 at 5552.427 kb on + strand, within Psyr_4684 at 5552.630 kb on + strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.783 kb on - strand, within Psyr_4684 at 5553.059 kb on + strand, within Psyr_4685 at 5553.659 kb on + strand at 5553.659 kb on + strand at 5553.659 kb on + strand at 5553.659 kb on + strand at 5553.833 kb on - strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.987 kb on + strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.988 kb on - strand, within Psyr_4686 at 5553.993 kb on + strand, within Psyr_4686 at 5553.993 kb on + strand, within Psyr_4686 at 5553.994 kb on - strand, within Psyr_4686 at 5553.994 kb on - strand, within Psyr_4686 at 5553.994 kb on - strand, within Psyr_4686 at 5554.458 kb on + strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686 at 5554.459 kb on - strand, within Psyr_4686
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,552,023 + +0.8 5,552,024 - +0.7 5,552,024 - -2.3 5,552,024 - -2.5 5,552,095 + -2.8 5,552,095 + -2.0 5,552,096 - -2.6 5,552,096 - -3.1 5,552,096 - -1.9 5,552,134 + -3.7 5,552,392 + Psyr_4684 0.41 -1.3 5,552,427 + Psyr_4684 0.45 -2.7 5,552,630 + Psyr_4684 0.70 -3.6 5,552,631 - Psyr_4684 0.70 -1.8 5,552,631 - Psyr_4684 0.70 -3.7 5,552,631 - Psyr_4684 0.70 -1.5 5,552,631 - Psyr_4684 0.70 -2.6 5,552,631 - Psyr_4684 0.70 -1.3 5,552,782 + Psyr_4684 0.89 -1.6 5,552,782 + Psyr_4684 0.89 -2.9 5,552,782 + Psyr_4684 0.89 -2.8 5,552,783 - Psyr_4684 0.89 -1.6 5,553,059 + Psyr_4685 0.27 -0.3 5,553,659 + -4.0 5,553,659 + -2.4 5,553,659 + -2.6 5,553,659 + -2.5 5,553,833 - Psyr_4686 0.21 -2.3 5,553,987 + Psyr_4686 0.34 -0.0 5,553,987 + Psyr_4686 0.34 -4.1 5,553,987 + Psyr_4686 0.34 -3.3 5,553,987 + Psyr_4686 0.34 -2.8 5,553,988 - Psyr_4686 0.34 -2.5 5,553,988 - Psyr_4686 0.34 -1.6 5,553,988 - Psyr_4686 0.34 -4.4 5,553,988 - Psyr_4686 0.34 -2.3 5,553,988 - Psyr_4686 0.34 -2.5 5,553,988 - Psyr_4686 0.34 -0.6 5,553,988 - Psyr_4686 0.34 -2.9 5,553,993 + Psyr_4686 0.34 -2.6 5,553,993 + Psyr_4686 0.34 -1.5 5,553,994 - Psyr_4686 0.34 -2.8 5,553,994 - Psyr_4686 0.34 -3.5 5,553,994 - Psyr_4686 0.34 -0.5 5,554,458 + Psyr_4686 0.73 -2.6 5,554,459 - Psyr_4686 0.73 -2.3 5,554,459 - Psyr_4686 0.73 -1.2 5,554,459 - Psyr_4686 0.73 -1.6 5,554,459 - Psyr_4686 0.73 -2.1
Or see this region's nucleotide sequence