Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4574

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4572 and Psyr_4573 are separated by 103 nucleotidesPsyr_4573 and Psyr_4574 are separated by 121 nucleotidesPsyr_4574 and Psyr_4575 are separated by 69 nucleotides Psyr_4572: Psyr_4572 - Short-chain dehydrogenase/reductase SDR, at 5,436,041 to 5,436,817 _4572 Psyr_4573: Psyr_4573 - Histidine triad (HIT) protein, at 5,436,921 to 5,437,259 _4573 Psyr_4574: Psyr_4574 - conserved hypothetical protein, at 5,437,381 to 5,438,028 _4574 Psyr_4575: Psyr_4575 - adenosylmethionine decarboxylase proenzyme, at 5,438,098 to 5,438,892 _4575 Position (kb) 5437 5438 5439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5436.442 kb on - strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.494 kb on + strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.495 kb on - strand, within Psyr_4572at 5436.497 kb on + strand, within Psyr_4572at 5436.497 kb on + strand, within Psyr_4572at 5436.497 kb on + strand, within Psyr_4572at 5436.497 kb on + strand, within Psyr_4572at 5436.497 kb on + strand, within Psyr_4572at 5436.498 kb on - strand, within Psyr_4572at 5436.498 kb on - strand, within Psyr_4572at 5436.498 kb on - strand, within Psyr_4572at 5436.498 kb on - strand, within Psyr_4572at 5436.498 kb on - strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.512 kb on + strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.513 kb on - strand, within Psyr_4572at 5436.671 kb on + strand, within Psyr_4572at 5436.671 kb on + strand, within Psyr_4572at 5436.671 kb on + strand, within Psyr_4572at 5436.671 kb on + strand, within Psyr_4572at 5436.671 kb on + strand, within Psyr_4572at 5436.672 kb on - strand, within Psyr_4572at 5436.672 kb on - strand, within Psyr_4572at 5436.672 kb on - strand, within Psyr_4572at 5436.674 kb on - strand, within Psyr_4572at 5436.789 kb on - strandat 5436.803 kb on + strandat 5436.803 kb on + strandat 5436.804 kb on - strandat 5436.853 kb on + strandat 5436.854 kb on - strandat 5436.881 kb on + strandat 5436.935 kb on + strandat 5436.936 kb on - strandat 5436.936 kb on - strandat 5436.975 kb on + strand, within Psyr_4573at 5436.975 kb on + strand, within Psyr_4573at 5436.975 kb on + strand, within Psyr_4573at 5436.975 kb on + strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.976 kb on - strand, within Psyr_4573at 5436.992 kb on - strand, within Psyr_4573at 5437.106 kb on + strand, within Psyr_4573at 5437.106 kb on + strand, within Psyr_4573at 5437.106 kb on + strand, within Psyr_4573at 5437.106 kb on + strand, within Psyr_4573at 5437.106 kb on + strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.107 kb on - strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.222 kb on + strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.223 kb on - strand, within Psyr_4573at 5437.349 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.036 kb on + strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.037 kb on - strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.038 kb on + strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.039 kb on - strandat 5438.099 kb on + strandat 5438.100 kb on - strandat 5438.100 kb on - strandat 5438.101 kb on + strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.121 kb on - strandat 5438.210 kb on + strand, within Psyr_4575at 5438.210 kb on + strand, within Psyr_4575at 5438.210 kb on + strand, within Psyr_4575at 5438.210 kb on + strand, within Psyr_4575at 5438.211 kb on - strand, within Psyr_4575at 5438.211 kb on - strand, within Psyr_4575at 5438.211 kb on - strand, within Psyr_4575at 5438.211 kb on - strand, within Psyr_4575at 5438.211 kb on - strand, within Psyr_4575at 5438.267 kb on + strand, within Psyr_4575at 5438.267 kb on + strand, within Psyr_4575at 5438.268 kb on - strand, within Psyr_4575at 5438.318 kb on + strand, within Psyr_4575at 5438.318 kb on + strand, within Psyr_4575at 5438.318 kb on + strand, within Psyr_4575at 5438.318 kb on + strand, within Psyr_4575at 5438.318 kb on + strand, within Psyr_4575at 5438.319 kb on - strand, within Psyr_4575at 5438.319 kb on - strand, within Psyr_4575at 5438.319 kb on - strand, within Psyr_4575at 5438.439 kb on - strand, within Psyr_4575at 5438.439 kb on - strand, within Psyr_4575at 5438.463 kb on + strand, within Psyr_4575at 5438.464 kb on - strand, within Psyr_4575at 5438.487 kb on + strand, within Psyr_4575at 5438.551 kb on - strand, within Psyr_4575at 5438.678 kb on + strand, within Psyr_4575at 5438.678 kb on + strand, within Psyr_4575at 5438.763 kb on - strand, within Psyr_4575at 5438.763 kb on - strand, within Psyr_4575at 5438.777 kb on + strand, within Psyr_4575at 5438.777 kb on + strand, within Psyr_4575at 5438.777 kb on + strand, within Psyr_4575at 5438.778 kb on - strand, within Psyr_4575at 5438.778 kb on - strand, within Psyr_4575at 5438.778 kb on - strand, within Psyr_4575at 5438.778 kb on - strand, within Psyr_4575at 5438.778 kb on - strand, within Psyr_4575at 5438.786 kb on + strand, within Psyr_4575at 5438.786 kb on + strand, within Psyr_4575at 5438.786 kb on + strand, within Psyr_4575at 5438.786 kb on + strand, within Psyr_4575at 5438.786 kb on + strand, within Psyr_4575at 5438.787 kb on - strand, within Psyr_4575at 5438.787 kb on - strand, within Psyr_4575at 5438.787 kb on - strand, within Psyr_4575at 5438.828 kb on + strandat 5438.828 kb on + strandat 5438.829 kb on - strandat 5438.829 kb on - strandat 5438.829 kb on - strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.907 kb on + strandat 5438.908 kb on - strandat 5438.908 kb on - strandat 5438.908 kb on - strandat 5438.908 kb on - strandat 5438.908 kb on - strandat 5438.908 kb on - strandat 5438.910 kb on - strandat 5438.971 kb on + strandat 5438.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,436,442 - Psyr_4572 0.52 +1.6
5,436,494 + Psyr_4572 0.58 +0.6
5,436,494 + Psyr_4572 0.58 +1.0
5,436,494 + Psyr_4572 0.58 +0.2
5,436,494 + Psyr_4572 0.58 -2.0
5,436,494 + Psyr_4572 0.58 -0.4
5,436,494 + Psyr_4572 0.58 +0.3
5,436,495 - Psyr_4572 0.58 +0.1
5,436,495 - Psyr_4572 0.58 +0.9
5,436,495 - Psyr_4572 0.58 +0.1
5,436,495 - Psyr_4572 0.58 -1.2
5,436,495 - Psyr_4572 0.58 +0.6
5,436,495 - Psyr_4572 0.58 +1.4
5,436,495 - Psyr_4572 0.58 -0.7
5,436,495 - Psyr_4572 0.58 +2.9
5,436,495 - Psyr_4572 0.58 +1.2
5,436,495 - Psyr_4572 0.58 +2.4
5,436,495 - Psyr_4572 0.58 +0.0
5,436,495 - Psyr_4572 0.58 -0.4
5,436,495 - Psyr_4572 0.58 +1.3
5,436,495 - Psyr_4572 0.58 -0.8
5,436,495 - Psyr_4572 0.58 +0.3
5,436,497 + Psyr_4572 0.59 +0.3
5,436,497 + Psyr_4572 0.59 -0.3
5,436,497 + Psyr_4572 0.59 -0.8
5,436,497 + Psyr_4572 0.59 +0.7
5,436,497 + Psyr_4572 0.59 +1.6
5,436,498 - Psyr_4572 0.59 +0.1
5,436,498 - Psyr_4572 0.59 +1.6
5,436,498 - Psyr_4572 0.59 +1.0
5,436,498 - Psyr_4572 0.59 +0.3
5,436,498 - Psyr_4572 0.59 +0.9
5,436,512 + Psyr_4572 0.61 +0.6
5,436,512 + Psyr_4572 0.61 -0.4
5,436,512 + Psyr_4572 0.61 +1.0
5,436,512 + Psyr_4572 0.61 -0.1
5,436,512 + Psyr_4572 0.61 +1.3
5,436,512 + Psyr_4572 0.61 +0.2
5,436,512 + Psyr_4572 0.61 +0.9
5,436,513 - Psyr_4572 0.61 +0.3
5,436,513 - Psyr_4572 0.61 +1.4
5,436,513 - Psyr_4572 0.61 +0.4
5,436,513 - Psyr_4572 0.61 +1.6
5,436,513 - Psyr_4572 0.61 +1.5
5,436,513 - Psyr_4572 0.61 +0.9
5,436,671 + Psyr_4572 0.81 +0.5
5,436,671 + Psyr_4572 0.81 -1.8
5,436,671 + Psyr_4572 0.81 +0.8
5,436,671 + Psyr_4572 0.81 +0.9
5,436,671 + Psyr_4572 0.81 -0.2
5,436,672 - Psyr_4572 0.81 -0.4
5,436,672 - Psyr_4572 0.81 -0.3
5,436,672 - Psyr_4572 0.81 +0.7
5,436,674 - Psyr_4572 0.81 +0.2
5,436,789 - -0.5
5,436,803 + +0.7
5,436,803 + +0.5
5,436,804 - +0.5
5,436,853 + +0.1
5,436,854 - +1.0
5,436,881 + +0.2
5,436,935 + +0.7
5,436,936 - -0.5
5,436,936 - +1.0
5,436,975 + Psyr_4573 0.16 +0.1
5,436,975 + Psyr_4573 0.16 -0.3
5,436,975 + Psyr_4573 0.16 -0.3
5,436,975 + Psyr_4573 0.16 -0.4
5,436,976 - Psyr_4573 0.16 +0.7
5,436,976 - Psyr_4573 0.16 +0.6
5,436,976 - Psyr_4573 0.16 -0.4
5,436,976 - Psyr_4573 0.16 +0.2
5,436,976 - Psyr_4573 0.16 +1.0
5,436,976 - Psyr_4573 0.16 +0.1
5,436,976 - Psyr_4573 0.16 +0.3
5,436,976 - Psyr_4573 0.16 +0.1
5,436,976 - Psyr_4573 0.16 -0.2
5,436,976 - Psyr_4573 0.16 -0.4
5,436,992 - Psyr_4573 0.21 -0.1
5,437,106 + Psyr_4573 0.55 -0.2
5,437,106 + Psyr_4573 0.55 +0.2
5,437,106 + Psyr_4573 0.55 -1.1
5,437,106 + Psyr_4573 0.55 +1.6
5,437,106 + Psyr_4573 0.55 -0.8
5,437,107 - Psyr_4573 0.55 -1.2
5,437,107 - Psyr_4573 0.55 -0.0
5,437,107 - Psyr_4573 0.55 +0.1
5,437,107 - Psyr_4573 0.55 +0.4
5,437,107 - Psyr_4573 0.55 +0.7
5,437,107 - Psyr_4573 0.55 +0.2
5,437,107 - Psyr_4573 0.55 -0.6
5,437,107 - Psyr_4573 0.55 -1.8
5,437,107 - Psyr_4573 0.55 -0.2
5,437,107 - Psyr_4573 0.55 +0.2
5,437,222 + Psyr_4573 0.89 +0.5
5,437,222 + Psyr_4573 0.89 -0.9
5,437,222 + Psyr_4573 0.89 +0.3
5,437,222 + Psyr_4573 0.89 +1.1
5,437,222 + Psyr_4573 0.89 +0.6
5,437,222 + Psyr_4573 0.89 -0.0
5,437,223 - Psyr_4573 0.89 +0.3
5,437,223 - Psyr_4573 0.89 -0.3
5,437,223 - Psyr_4573 0.89 -0.3
5,437,223 - Psyr_4573 0.89 -0.1
5,437,223 - Psyr_4573 0.89 +1.7
5,437,223 - Psyr_4573 0.89 +1.2
5,437,223 - Psyr_4573 0.89 +1.2
5,437,223 - Psyr_4573 0.89 +1.2
5,437,223 - Psyr_4573 0.89 -0.1
5,437,223 - Psyr_4573 0.89 +1.7
5,437,223 - Psyr_4573 0.89 -0.3
5,437,223 - Psyr_4573 0.89 +1.6
5,437,223 - Psyr_4573 0.89 +0.9
5,437,349 + +0.1
5,438,036 + +0.1
5,438,036 + +0.6
5,438,036 + +1.3
5,438,036 + -1.2
5,438,036 + +1.2
5,438,036 + +1.0
5,438,036 + +0.3
5,438,036 + +0.8
5,438,037 - +2.1
5,438,037 - -0.7
5,438,037 - +0.1
5,438,037 - -0.3
5,438,037 - +1.0
5,438,037 - -0.1
5,438,037 - +2.0
5,438,037 - +0.2
5,438,037 - -0.3
5,438,037 - +0.7
5,438,037 - -0.2
5,438,038 + +0.8
5,438,038 + -0.9
5,438,038 + +0.1
5,438,038 + +0.8
5,438,038 + +1.0
5,438,038 + +1.0
5,438,038 + +0.1
5,438,038 + +0.6
5,438,038 + +1.2
5,438,038 + +0.6
5,438,038 + -2.8
5,438,038 + +0.2
5,438,039 - +0.2
5,438,039 - +0.3
5,438,039 - -0.4
5,438,039 - -0.0
5,438,039 - +0.4
5,438,039 - +1.2
5,438,039 - -0.6
5,438,039 - +1.1
5,438,099 + +0.4
5,438,100 - +1.3
5,438,100 - +0.7
5,438,101 + -0.8
5,438,102 - -0.2
5,438,102 - +0.7
5,438,121 - +0.7
5,438,210 + Psyr_4575 0.14 +0.8
5,438,210 + Psyr_4575 0.14 -0.2
5,438,210 + Psyr_4575 0.14 +1.2
5,438,210 + Psyr_4575 0.14 -0.6
5,438,211 - Psyr_4575 0.14 +1.4
5,438,211 - Psyr_4575 0.14 +2.9
5,438,211 - Psyr_4575 0.14 +0.0
5,438,211 - Psyr_4575 0.14 -0.9
5,438,211 - Psyr_4575 0.14 +1.1
5,438,267 + Psyr_4575 0.21 +1.1
5,438,267 + Psyr_4575 0.21 -0.2
5,438,268 - Psyr_4575 0.21 +0.1
5,438,318 + Psyr_4575 0.28 -0.1
5,438,318 + Psyr_4575 0.28 +0.0
5,438,318 + Psyr_4575 0.28 -2.6
5,438,318 + Psyr_4575 0.28 +0.6
5,438,318 + Psyr_4575 0.28 +0.8
5,438,319 - Psyr_4575 0.28 +1.9
5,438,319 - Psyr_4575 0.28 +1.5
5,438,319 - Psyr_4575 0.28 +0.3
5,438,439 - Psyr_4575 0.43 +2.0
5,438,439 - Psyr_4575 0.43 +1.2
5,438,463 + Psyr_4575 0.46 +1.7
5,438,464 - Psyr_4575 0.46 +0.4
5,438,487 + Psyr_4575 0.49 -0.2
5,438,551 - Psyr_4575 0.57 -0.2
5,438,678 + Psyr_4575 0.73 +0.3
5,438,678 + Psyr_4575 0.73 +4.0
5,438,763 - Psyr_4575 0.84 +0.7
5,438,763 - Psyr_4575 0.84 -0.2
5,438,777 + Psyr_4575 0.85 +0.1
5,438,777 + Psyr_4575 0.85 +0.8
5,438,777 + Psyr_4575 0.85 +0.5
5,438,778 - Psyr_4575 0.86 -0.2
5,438,778 - Psyr_4575 0.86 -1.0
5,438,778 - Psyr_4575 0.86 -0.0
5,438,778 - Psyr_4575 0.86 -0.3
5,438,778 - Psyr_4575 0.86 -0.2
5,438,786 + Psyr_4575 0.87 +0.0
5,438,786 + Psyr_4575 0.87 +0.0
5,438,786 + Psyr_4575 0.87 +1.4
5,438,786 + Psyr_4575 0.87 +0.5
5,438,786 + Psyr_4575 0.87 -1.0
5,438,787 - Psyr_4575 0.87 +0.4
5,438,787 - Psyr_4575 0.87 +0.2
5,438,787 - Psyr_4575 0.87 -2.5
5,438,828 + +0.3
5,438,828 + +0.1
5,438,829 - -0.6
5,438,829 - -0.6
5,438,829 - -1.0
5,438,907 + +0.5
5,438,907 + +1.2
5,438,907 + -0.5
5,438,907 + +0.3
5,438,907 + +0.5
5,438,907 + +0.8
5,438,907 + +0.1
5,438,907 + +0.2
5,438,907 + +0.6
5,438,908 - +0.4
5,438,908 - +0.0
5,438,908 - +0.2
5,438,908 - +1.4
5,438,908 - +0.9
5,438,908 - +0.8
5,438,910 - +0.6
5,438,971 + +1.4
5,438,972 - +0.1

Or see this region's nucleotide sequence