Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3160

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3159 and Psyr_3160 are separated by 1 nucleotidesPsyr_3160 and Psyr_3161 overlap by 4 nucleotides Psyr_3159: Psyr_3159 - Type I secretion outer membrane protein, TolC, at 3,786,200 to 3,787,549 _3159 Psyr_3160: Psyr_3160 - Type I secretion membrane fusion protein, HlyD, at 3,787,551 to 3,788,888 _3160 Psyr_3161: Psyr_3161 - Type I secretion system ATPase, PrtD, at 3,788,885 to 3,790,681 _3161 Position (kb) 3787 3788 3789Strain fitness (log2 ratio) -1 0 1 2at 3786.594 kb on + strand, within Psyr_3159at 3786.595 kb on - strand, within Psyr_3159at 3786.595 kb on - strand, within Psyr_3159at 3786.621 kb on - strand, within Psyr_3159at 3786.621 kb on - strand, within Psyr_3159at 3786.648 kb on + strand, within Psyr_3159at 3786.648 kb on + strand, within Psyr_3159at 3786.648 kb on + strand, within Psyr_3159at 3786.649 kb on - strand, within Psyr_3159at 3786.649 kb on - strand, within Psyr_3159at 3786.649 kb on - strand, within Psyr_3159at 3786.649 kb on - strand, within Psyr_3159at 3786.682 kb on + strand, within Psyr_3159at 3787.269 kb on + strand, within Psyr_3159at 3787.270 kb on - strand, within Psyr_3159at 3787.341 kb on + strand, within Psyr_3159at 3787.341 kb on + strand, within Psyr_3159at 3787.341 kb on + strand, within Psyr_3159at 3787.342 kb on - strand, within Psyr_3159at 3787.342 kb on - strand, within Psyr_3159at 3787.342 kb on - strand, within Psyr_3159at 3787.342 kb on - strand, within Psyr_3159at 3787.347 kb on + strand, within Psyr_3159at 3787.347 kb on + strand, within Psyr_3159at 3787.348 kb on - strand, within Psyr_3159at 3787.348 kb on - strand, within Psyr_3159at 3787.428 kb on + strandat 3787.458 kb on + strandat 3787.553 kb on - strandat 3787.553 kb on - strandat 3787.553 kb on - strandat 3787.603 kb on + strandat 3787.603 kb on + strandat 3787.603 kb on + strandat 3787.604 kb on - strandat 3787.720 kb on + strand, within Psyr_3160at 3787.720 kb on + strand, within Psyr_3160at 3787.720 kb on + strand, within Psyr_3160at 3787.721 kb on - strand, within Psyr_3160at 3787.721 kb on - strand, within Psyr_3160at 3787.721 kb on - strand, within Psyr_3160at 3787.721 kb on - strand, within Psyr_3160at 3788.051 kb on + strand, within Psyr_3160at 3788.102 kb on - strand, within Psyr_3160at 3788.144 kb on + strand, within Psyr_3160at 3788.144 kb on + strand, within Psyr_3160at 3788.145 kb on - strand, within Psyr_3160at 3788.145 kb on - strand, within Psyr_3160at 3788.154 kb on + strand, within Psyr_3160at 3788.154 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.156 kb on + strand, within Psyr_3160at 3788.157 kb on - strand, within Psyr_3160at 3788.157 kb on - strand, within Psyr_3160at 3788.157 kb on - strand, within Psyr_3160at 3788.677 kb on - strand, within Psyr_3160at 3788.888 kb on + strandat 3788.889 kb on - strandat 3789.231 kb on + strand, within Psyr_3161at 3789.232 kb on - strand, within Psyr_3161at 3789.341 kb on + strand, within Psyr_3161at 3789.457 kb on + strand, within Psyr_3161at 3789.457 kb on + strand, within Psyr_3161at 3789.458 kb on - strand, within Psyr_3161at 3789.458 kb on - strand, within Psyr_3161at 3789.459 kb on + strand, within Psyr_3161at 3789.459 kb on + strand, within Psyr_3161at 3789.459 kb on + strand, within Psyr_3161at 3789.460 kb on - strand, within Psyr_3161at 3789.460 kb on - strand, within Psyr_3161at 3789.460 kb on - strand, within Psyr_3161at 3789.735 kb on + strand, within Psyr_3161at 3789.736 kb on - strand, within Psyr_3161at 3789.736 kb on - strand, within Psyr_3161at 3789.747 kb on - strand, within Psyr_3161

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,786,594 + Psyr_3159 0.29 +0.8
3,786,595 - Psyr_3159 0.29 -0.3
3,786,595 - Psyr_3159 0.29 +0.9
3,786,621 - Psyr_3159 0.31 -0.6
3,786,621 - Psyr_3159 0.31 +0.6
3,786,648 + Psyr_3159 0.33 +1.6
3,786,648 + Psyr_3159 0.33 +0.9
3,786,648 + Psyr_3159 0.33 +0.7
3,786,649 - Psyr_3159 0.33 +0.1
3,786,649 - Psyr_3159 0.33 +0.1
3,786,649 - Psyr_3159 0.33 +1.7
3,786,649 - Psyr_3159 0.33 +0.0
3,786,682 + Psyr_3159 0.36 +0.6
3,787,269 + Psyr_3159 0.79 +1.7
3,787,270 - Psyr_3159 0.79 -0.0
3,787,341 + Psyr_3159 0.85 +0.8
3,787,341 + Psyr_3159 0.85 +0.4
3,787,341 + Psyr_3159 0.85 +2.3
3,787,342 - Psyr_3159 0.85 -0.6
3,787,342 - Psyr_3159 0.85 +0.2
3,787,342 - Psyr_3159 0.85 +0.1
3,787,342 - Psyr_3159 0.85 -1.1
3,787,347 + Psyr_3159 0.85 -0.4
3,787,347 + Psyr_3159 0.85 +0.7
3,787,348 - Psyr_3159 0.85 +0.6
3,787,348 - Psyr_3159 0.85 +0.6
3,787,428 + -0.9
3,787,458 + +0.1
3,787,553 - +0.2
3,787,553 - +0.8
3,787,553 - +0.1
3,787,603 + +0.1
3,787,603 + +0.5
3,787,603 + +0.1
3,787,604 - +2.5
3,787,720 + Psyr_3160 0.13 +0.6
3,787,720 + Psyr_3160 0.13 +0.7
3,787,720 + Psyr_3160 0.13 +1.6
3,787,721 - Psyr_3160 0.13 +1.1
3,787,721 - Psyr_3160 0.13 +1.0
3,787,721 - Psyr_3160 0.13 +0.1
3,787,721 - Psyr_3160 0.13 -0.1
3,788,051 + Psyr_3160 0.37 -0.0
3,788,102 - Psyr_3160 0.41 +0.4
3,788,144 + Psyr_3160 0.44 -0.4
3,788,144 + Psyr_3160 0.44 -0.2
3,788,145 - Psyr_3160 0.44 -0.5
3,788,145 - Psyr_3160 0.44 +0.1
3,788,154 + Psyr_3160 0.45 +0.8
3,788,154 + Psyr_3160 0.45 +0.7
3,788,156 + Psyr_3160 0.45 +0.5
3,788,156 + Psyr_3160 0.45 +1.0
3,788,156 + Psyr_3160 0.45 +0.9
3,788,156 + Psyr_3160 0.45 +0.0
3,788,156 + Psyr_3160 0.45 +1.7
3,788,156 + Psyr_3160 0.45 +0.5
3,788,156 + Psyr_3160 0.45 -0.9
3,788,156 + Psyr_3160 0.45 -0.0
3,788,157 - Psyr_3160 0.45 +1.5
3,788,157 - Psyr_3160 0.45 -1.5
3,788,157 - Psyr_3160 0.45 -0.6
3,788,677 - Psyr_3160 0.84 -0.2
3,788,888 + +0.4
3,788,889 - +0.6
3,789,231 + Psyr_3161 0.19 -1.4
3,789,232 - Psyr_3161 0.19 +1.3
3,789,341 + Psyr_3161 0.25 -0.3
3,789,457 + Psyr_3161 0.32 +0.2
3,789,457 + Psyr_3161 0.32 +0.2
3,789,458 - Psyr_3161 0.32 -0.6
3,789,458 - Psyr_3161 0.32 +1.7
3,789,459 + Psyr_3161 0.32 +0.7
3,789,459 + Psyr_3161 0.32 +2.1
3,789,459 + Psyr_3161 0.32 +0.7
3,789,460 - Psyr_3161 0.32 +1.7
3,789,460 - Psyr_3161 0.32 +1.1
3,789,460 - Psyr_3161 0.32 -1.4
3,789,735 + Psyr_3161 0.47 +1.1
3,789,736 - Psyr_3161 0.47 -0.1
3,789,736 - Psyr_3161 0.47 +0.5
3,789,747 - Psyr_3161 0.48 +1.7

Or see this region's nucleotide sequence