Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1759

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1758 and Psyr_1759 overlap by 4 nucleotidesPsyr_1759 and Psyr_1760 are separated by 137 nucleotides Psyr_1758: Psyr_1758 - extracellular solute-binding protein, family 5, at 1,997,504 to 1,999,360 _1758 Psyr_1759: Psyr_1759 - extracellular solute-binding protein, family 5, at 1,999,357 to 2,001,186 _1759 Psyr_1760: Psyr_1760 - Peptidoglycan-binding LysM:SLT:MLTD_N, at 2,001,324 to 2,002,928 _1760 Position (kb) 1999 2000 2001 2002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1998.585 kb on + strand, within Psyr_1758at 1998.586 kb on - strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.612 kb on + strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.666 kb on + strand, within Psyr_1758at 1998.667 kb on - strand, within Psyr_1758at 1998.689 kb on + strand, within Psyr_1758at 1998.689 kb on + strand, within Psyr_1758at 1998.689 kb on + strand, within Psyr_1758at 1998.690 kb on - strand, within Psyr_1758at 1998.889 kb on - strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1999.054 kb on - strand, within Psyr_1758at 1999.260 kb on + strandat 1999.260 kb on + strandat 1999.408 kb on - strandat 1999.470 kb on - strandat 1999.487 kb on + strandat 1999.487 kb on + strandat 1999.487 kb on + strandat 1999.488 kb on - strandat 1999.488 kb on - strandat 1999.488 kb on - strandat 1999.505 kb on - strandat 1999.607 kb on + strand, within Psyr_1759at 1999.607 kb on + strand, within Psyr_1759at 1999.649 kb on + strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.799 kb on + strand, within Psyr_1759at 1999.799 kb on + strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.088 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.411 kb on + strand, within Psyr_1759at 2000.448 kb on - strand, within Psyr_1759at 2000.565 kb on - strand, within Psyr_1759at 2000.825 kb on + strand, within Psyr_1759at 2000.826 kb on - strand, within Psyr_1759at 2000.934 kb on - strand, within Psyr_1759at 2001.084 kb on - strandat 2001.181 kb on + strandat 2001.181 kb on + strandat 2001.181 kb on + strandat 2001.181 kb on + strandat 2001.181 kb on + strandat 2001.223 kb on - strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.437 kb on - strandat 2001.437 kb on - strandat 2001.437 kb on - strandat 2001.464 kb on - strandat 2001.676 kb on + strand, within Psyr_1760at 2001.676 kb on + strand, within Psyr_1760at 2001.677 kb on - strand, within Psyr_1760at 2001.807 kb on - strand, within Psyr_1760at 2002.022 kb on + strand, within Psyr_1760at 2002.102 kb on + strand, within Psyr_1760at 2002.102 kb on + strand, within Psyr_1760at 2002.102 kb on + strand, within Psyr_1760at 2002.102 kb on + strand, within Psyr_1760at 2002.102 kb on + strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.139 kb on - strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,998,585 + Psyr_1758 0.58 +0.7
1,998,586 - Psyr_1758 0.58 +0.1
1,998,599 + Psyr_1758 0.59 +0.7
1,998,600 - Psyr_1758 0.59 -0.4
1,998,600 - Psyr_1758 0.59 +0.3
1,998,612 + Psyr_1758 0.60 +1.1
1,998,613 - Psyr_1758 0.60 +0.3
1,998,613 - Psyr_1758 0.60 -0.5
1,998,666 + Psyr_1758 0.63 -1.3
1,998,667 - Psyr_1758 0.63 +0.8
1,998,689 + Psyr_1758 0.64 -1.3
1,998,689 + Psyr_1758 0.64 -0.1
1,998,689 + Psyr_1758 0.64 -0.9
1,998,690 - Psyr_1758 0.64 +0.3
1,998,889 - Psyr_1758 0.75 -0.0
1,998,897 + Psyr_1758 0.75 +0.3
1,998,897 + Psyr_1758 0.75 +0.3
1,998,897 + Psyr_1758 0.75 +0.5
1,998,898 - Psyr_1758 0.75 -1.3
1,998,898 - Psyr_1758 0.75 +0.9
1,998,898 - Psyr_1758 0.75 -1.0
1,998,898 - Psyr_1758 0.75 +0.6
1,998,898 - Psyr_1758 0.75 -1.4
1,998,898 - Psyr_1758 0.75 -1.3
1,999,054 - Psyr_1758 0.83 -0.0
1,999,260 + +0.3
1,999,260 + -0.8
1,999,408 - +1.1
1,999,470 - +0.3
1,999,487 + +0.3
1,999,487 + -0.4
1,999,487 + -1.4
1,999,488 - -1.5
1,999,488 - -0.7
1,999,488 - +0.2
1,999,505 - -0.6
1,999,607 + Psyr_1759 0.14 -1.1
1,999,607 + Psyr_1759 0.14 -1.7
1,999,649 + Psyr_1759 0.16 -0.3
1,999,737 - Psyr_1759 0.21 -2.7
1,999,799 + Psyr_1759 0.24 -0.9
1,999,799 + Psyr_1759 0.24 -1.3
1,999,800 - Psyr_1759 0.24 -0.7
1,999,800 - Psyr_1759 0.24 -0.3
1,999,800 - Psyr_1759 0.24 -0.3
2,000,087 + Psyr_1759 0.40 -0.7
2,000,087 + Psyr_1759 0.40 +1.3
2,000,087 + Psyr_1759 0.40 +0.9
2,000,087 + Psyr_1759 0.40 +0.1
2,000,088 + Psyr_1759 0.40 +0.7
2,000,327 + Psyr_1759 0.53 +0.3
2,000,327 + Psyr_1759 0.53 -0.4
2,000,327 + Psyr_1759 0.53 -0.4
2,000,327 + Psyr_1759 0.53 -1.4
2,000,327 + Psyr_1759 0.53 +0.1
2,000,327 + Psyr_1759 0.53 +0.3
2,000,327 + Psyr_1759 0.53 -0.4
2,000,327 + Psyr_1759 0.53 -0.9
2,000,327 + Psyr_1759 0.53 -0.0
2,000,328 - Psyr_1759 0.53 +0.2
2,000,328 - Psyr_1759 0.53 +0.7
2,000,328 - Psyr_1759 0.53 -0.8
2,000,328 - Psyr_1759 0.53 +0.0
2,000,328 - Psyr_1759 0.53 -1.7
2,000,328 - Psyr_1759 0.53 -0.9
2,000,328 - Psyr_1759 0.53 +1.1
2,000,411 + Psyr_1759 0.58 +1.1
2,000,448 - Psyr_1759 0.60 -0.4
2,000,565 - Psyr_1759 0.66 -0.5
2,000,825 + Psyr_1759 0.80 -1.5
2,000,826 - Psyr_1759 0.80 +0.3
2,000,934 - Psyr_1759 0.86 +1.5
2,001,084 - +2.9
2,001,181 + +0.3
2,001,181 + -0.3
2,001,181 + -2.9
2,001,181 + -1.9
2,001,181 + -1.7
2,001,223 - -0.4
2,001,436 + -0.6
2,001,436 + +0.9
2,001,436 + +1.4
2,001,436 + -0.9
2,001,436 + -1.0
2,001,437 - +0.3
2,001,437 - +0.6
2,001,437 - -0.4
2,001,464 - +0.1
2,001,676 + Psyr_1760 0.22 +2.1
2,001,676 + Psyr_1760 0.22 +0.9
2,001,677 - Psyr_1760 0.22 +0.9
2,001,807 - Psyr_1760 0.30 -0.3
2,002,022 + Psyr_1760 0.43 +0.3
2,002,102 + Psyr_1760 0.48 +0.9
2,002,102 + Psyr_1760 0.48 +0.1
2,002,102 + Psyr_1760 0.48 +1.7
2,002,102 + Psyr_1760 0.48 +0.0
2,002,102 + Psyr_1760 0.48 -2.7
2,002,103 - Psyr_1760 0.49 +0.1
2,002,103 - Psyr_1760 0.49 +0.8
2,002,103 - Psyr_1760 0.49 +0.3
2,002,103 - Psyr_1760 0.49 +0.5
2,002,103 - Psyr_1760 0.49 +1.1
2,002,103 - Psyr_1760 0.49 -1.3
2,002,103 - Psyr_1760 0.49 +1.3
2,002,103 - Psyr_1760 0.49 -0.2
2,002,139 - Psyr_1760 0.51 -0.8
2,002,155 + Psyr_1760 0.52 -0.3
2,002,155 + Psyr_1760 0.52 +1.1
2,002,155 + Psyr_1760 0.52 -1.5
2,002,155 + Psyr_1760 0.52 -2.3
2,002,155 + Psyr_1760 0.52 +1.8
2,002,155 + Psyr_1760 0.52 -1.3
2,002,155 + Psyr_1760 0.52 +1.5
2,002,155 + Psyr_1760 0.52 +0.1
2,002,155 + Psyr_1760 0.52 +1.2
2,002,155 + Psyr_1760 0.52 +0.2
2,002,156 - Psyr_1760 0.52 -1.1
2,002,156 - Psyr_1760 0.52 +0.8
2,002,156 - Psyr_1760 0.52 -3.4
2,002,156 - Psyr_1760 0.52 -0.3
2,002,156 - Psyr_1760 0.52 -0.7

Or see this region's nucleotide sequence