Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Position (kb) 650
651 Strain fitness (log2 ratio) -2
-1
0
1 at 649.838 kb on + strand, within Psyr_0571 at 649.838 kb on + strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.869 kb on + strand, within Psyr_0571 at 649.870 kb on - strand, within Psyr_0571 at 649.870 kb on - strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.515 kb on + strand at 650.515 kb on + strand at 650.544 kb on + strand at 650.593 kb on + strand at 650.603 kb on + strand at 650.871 kb on - strand at 650.880 kb on + strand at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.242 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.868 kb on + strand, within Psyr_0573
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 649,838 + Psyr_0571 0.29 -2.4 649,838 + Psyr_0571 0.29 -2.2 649,839 - Psyr_0571 0.29 -1.9 649,839 - Psyr_0571 0.29 -0.1 649,862 + Psyr_0571 0.32 -0.3 649,862 + Psyr_0571 0.32 -2.2 649,862 + Psyr_0571 0.32 -1.0 649,862 + Psyr_0571 0.32 -1.0 649,869 + Psyr_0571 0.32 -0.6 649,870 - Psyr_0571 0.33 -2.0 649,870 - Psyr_0571 0.33 +0.0 650,015 + Psyr_0571 0.47 -1.0 650,015 + Psyr_0571 0.47 -0.1 650,016 - Psyr_0571 0.48 -1.9 650,016 - Psyr_0571 0.48 +0.4 650,016 - Psyr_0571 0.48 -0.1 650,154 + Psyr_0571 0.62 +0.2 650,155 - Psyr_0571 0.62 -1.0 650,157 - Psyr_0571 0.62 +1.6 650,157 - Psyr_0571 0.62 -0.7 650,157 - Psyr_0571 0.62 -0.3 650,515 + -0.4 650,515 + +0.5 650,544 + +0.0 650,593 + -0.1 650,603 + -1.1 650,871 - -1.3 650,880 + -1.1 651,060 + Psyr_0573 0.13 +0.6 651,061 - Psyr_0573 0.13 +0.5 651,061 - Psyr_0573 0.13 -0.4 651,061 - Psyr_0573 0.13 -0.7 651,242 + Psyr_0573 0.27 -0.0 651,840 + Psyr_0573 0.73 +1.3 651,840 + Psyr_0573 0.73 -1.4 651,840 + Psyr_0573 0.73 -0.3 651,840 + Psyr_0573 0.73 +1.4 651,840 + Psyr_0573 0.73 -0.5 651,840 + Psyr_0573 0.73 +0.6 651,841 - Psyr_0573 0.73 +1.4 651,868 + Psyr_0573 0.75 -0.8
Or see this region's nucleotide sequence