Experiment: R2A with copper (II) chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3060 and Atu3061 are separated by 252 nucleotides Atu3061 and Atu3062 are separated by 238 nucleotides
Atu3060: Atu3060 - ABC transporter permease, at 60,688 to 62,652
Atu3060
Atu3061: Atu3061 - diguanylate cyclase, at 62,905 to 64,674
Atu3061
Atu3062: Atu3062 - LacI family transcriptional regulator, at 64,913 to 65,941
Atu3062
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 61.958 kb on - strand, within Atu3060 at 62.012 kb on - strand, within Atu3060 at 62.191 kb on - strand, within Atu3060 at 62.376 kb on + strand, within Atu3060 at 62.376 kb on + strand, within Atu3060 at 62.506 kb on - strand at 62.506 kb on - strand at 62.528 kb on - strand at 62.531 kb on + strand at 62.544 kb on - strand at 62.715 kb on + strand at 62.879 kb on - strand at 62.910 kb on + strand at 62.910 kb on + strand at 62.926 kb on + strand at 62.926 kb on + strand at 62.931 kb on + strand at 62.931 kb on + strand at 62.939 kb on - strand at 62.939 kb on - strand at 62.939 kb on - strand at 62.945 kb on + strand at 62.953 kb on - strand at 62.960 kb on - strand at 63.001 kb on + strand at 63.007 kb on - strand at 63.009 kb on - strand at 63.068 kb on + strand at 63.174 kb on - strand, within Atu3061 at 63.180 kb on + strand, within Atu3061 at 63.316 kb on + strand, within Atu3061 at 63.339 kb on + strand, within Atu3061 at 63.339 kb on + strand, within Atu3061 at 63.339 kb on + strand, within Atu3061 at 63.345 kb on - strand, within Atu3061 at 63.347 kb on - strand, within Atu3061 at 63.348 kb on + strand, within Atu3061 at 63.351 kb on + strand, within Atu3061 at 63.359 kb on - strand, within Atu3061 at 63.359 kb on - strand, within Atu3061 at 63.371 kb on - strand, within Atu3061 at 63.424 kb on - strand, within Atu3061 at 63.473 kb on - strand, within Atu3061 at 63.473 kb on - strand, within Atu3061 at 63.504 kb on + strand, within Atu3061 at 63.512 kb on - strand, within Atu3061 at 63.512 kb on - strand, within Atu3061 at 63.517 kb on - strand, within Atu3061 at 63.582 kb on + strand, within Atu3061 at 63.590 kb on - strand, within Atu3061 at 63.590 kb on - strand, within Atu3061 at 63.598 kb on - strand, within Atu3061 at 63.669 kb on + strand, within Atu3061 at 63.697 kb on - strand, within Atu3061 at 63.880 kb on + strand, within Atu3061 at 63.939 kb on - strand, within Atu3061 at 64.020 kb on + strand, within Atu3061 at 64.179 kb on - strand, within Atu3061 at 64.245 kb on - strand, within Atu3061 at 64.450 kb on + strand, within Atu3061 at 64.469 kb on + strand, within Atu3061 at 64.507 kb on + strand at 64.507 kb on + strand at 64.582 kb on + strand at 64.625 kb on + strand at 64.730 kb on + strand at 64.812 kb on + strand at 64.908 kb on + strand at 64.956 kb on + strand at 65.056 kb on + strand, within Atu3062 at 65.193 kb on + strand, within Atu3062 at 65.201 kb on - strand, within Atu3062 at 65.287 kb on - strand, within Atu3062 at 65.310 kb on - strand, within Atu3062 at 65.403 kb on + strand, within Atu3062 at 65.411 kb on - strand, within Atu3062 at 65.454 kb on - strand, within Atu3062 at 65.496 kb on + strand, within Atu3062 at 65.504 kb on - strand, within Atu3062 at 65.557 kb on + strand, within Atu3062
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with copper (II) chloride 0.04 mM remove 61,958 - Atu3060 0.65 +0.1 62,012 - Atu3060 0.67 -0.8 62,191 - Atu3060 0.76 +0.2 62,376 + Atu3060 0.86 -1.0 62,376 + Atu3060 0.86 -0.0 62,506 - -0.7 62,506 - -1.7 62,528 - -1.4 62,531 + +0.1 62,544 - -0.9 62,715 + +1.0 62,879 - +1.2 62,910 + -0.4 62,910 + -0.9 62,926 + -0.9 62,926 + +0.0 62,931 + -1.8 62,931 + -0.0 62,939 - -1.6 62,939 - -0.6 62,939 - -0.1 62,945 + -0.2 62,953 - -0.6 62,960 - -0.6 63,001 + -0.6 63,007 - +0.3 63,009 - -0.4 63,068 + -0.3 63,174 - Atu3061 0.15 -1.6 63,180 + Atu3061 0.16 -0.4 63,316 + Atu3061 0.23 -0.5 63,339 + Atu3061 0.25 -0.3 63,339 + Atu3061 0.25 -0.8 63,339 + Atu3061 0.25 -0.7 63,345 - Atu3061 0.25 -1.1 63,347 - Atu3061 0.25 -0.0 63,348 + Atu3061 0.25 -0.2 63,351 + Atu3061 0.25 -0.0 63,359 - Atu3061 0.26 +0.6 63,359 - Atu3061 0.26 +0.1 63,371 - Atu3061 0.26 -0.5 63,424 - Atu3061 0.29 -0.7 63,473 - Atu3061 0.32 -0.3 63,473 - Atu3061 0.32 -0.2 63,504 + Atu3061 0.34 -0.3 63,512 - Atu3061 0.34 -0.1 63,512 - Atu3061 0.34 -0.8 63,517 - Atu3061 0.35 +0.1 63,582 + Atu3061 0.38 -1.2 63,590 - Atu3061 0.39 -0.1 63,590 - Atu3061 0.39 +0.4 63,598 - Atu3061 0.39 -2.4 63,669 + Atu3061 0.43 -1.1 63,697 - Atu3061 0.45 -2.5 63,880 + Atu3061 0.55 -0.5 63,939 - Atu3061 0.58 -0.2 64,020 + Atu3061 0.63 -0.8 64,179 - Atu3061 0.72 -1.3 64,245 - Atu3061 0.76 -0.6 64,450 + Atu3061 0.87 -0.6 64,469 + Atu3061 0.88 -0.3 64,507 + -0.2 64,507 + +0.4 64,582 + +0.9 64,625 + -0.4 64,730 + +0.2 64,812 + -1.2 64,908 + -1.0 64,956 + +0.0 65,056 + Atu3062 0.14 -2.2 65,193 + Atu3062 0.27 +0.3 65,201 - Atu3062 0.28 -0.2 65,287 - Atu3062 0.36 +0.1 65,310 - Atu3062 0.39 -0.4 65,403 + Atu3062 0.48 -0.3 65,411 - Atu3062 0.48 -0.5 65,454 - Atu3062 0.53 -0.7 65,496 + Atu3062 0.57 -2.3 65,504 - Atu3062 0.57 -0.6 65,557 + Atu3062 0.63 +0.2
Or see this region's nucleotide sequence