Experiment: R2A with Nickel (II) chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3054 and Atu3055 are separated by 199 nucleotides Atu3055 and Atu3056 are separated by 44 nucleotides
Atu3054: Atu3054 - hypothetical protein, at 52,166 to 53,335
Atu3054
Atu3055: Atu3055 - hypothetical protein, at 53,535 to 54,800
Atu3055
Atu3056: Atu3056 - beta 1,3 glucan synthase catalytic subunit, at 54,845 to 56,809
Atu3056
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.544 kb on - strand, within Atu3054 at 52.559 kb on + strand, within Atu3054 at 52.561 kb on + strand, within Atu3054 at 52.567 kb on - strand, within Atu3054 at 52.571 kb on - strand, within Atu3054 at 52.733 kb on + strand, within Atu3054 at 52.773 kb on - strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.824 kb on + strand, within Atu3054 at 52.832 kb on - strand, within Atu3054 at 52.913 kb on + strand, within Atu3054 at 52.961 kb on + strand, within Atu3054 at 53.012 kb on - strand, within Atu3054 at 53.082 kb on - strand, within Atu3054 at 53.097 kb on + strand, within Atu3054 at 53.097 kb on + strand, within Atu3054 at 53.115 kb on + strand, within Atu3054 at 53.148 kb on - strand, within Atu3054 at 53.295 kb on - strand at 53.319 kb on + strand at 53.394 kb on - strand at 53.405 kb on + strand at 53.407 kb on + strand at 53.407 kb on + strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.424 kb on + strand at 53.432 kb on - strand at 53.432 kb on - strand at 53.448 kb on + strand at 53.524 kb on - strand at 53.656 kb on + strand at 53.664 kb on + strand, within Atu3055 at 53.691 kb on - strand, within Atu3055 at 53.872 kb on + strand, within Atu3055 at 53.940 kb on - strand, within Atu3055 at 54.063 kb on + strand, within Atu3055 at 54.063 kb on + strand, within Atu3055 at 54.071 kb on - strand, within Atu3055 at 54.076 kb on + strand, within Atu3055 at 54.170 kb on - strand, within Atu3055 at 54.187 kb on + strand, within Atu3055 at 54.281 kb on - strand, within Atu3055 at 54.314 kb on + strand, within Atu3055 at 54.351 kb on - strand, within Atu3055 at 54.409 kb on + strand, within Atu3055 at 54.412 kb on - strand, within Atu3055 at 54.415 kb on - strand, within Atu3055 at 54.464 kb on + strand, within Atu3055 at 54.483 kb on - strand, within Atu3055 at 54.505 kb on + strand, within Atu3055 at 54.534 kb on - strand, within Atu3055 at 54.589 kb on + strand, within Atu3055 at 54.589 kb on + strand, within Atu3055 at 54.676 kb on - strand at 54.698 kb on + strand at 54.710 kb on + strand at 55.003 kb on + strand at 55.003 kb on + strand at 55.003 kb on + strand at 55.011 kb on - strand at 55.021 kb on - strand at 55.110 kb on - strand, within Atu3056 at 55.117 kb on - strand, within Atu3056 at 55.255 kb on + strand, within Atu3056 at 55.260 kb on + strand, within Atu3056 at 55.269 kb on + strand, within Atu3056 at 55.300 kb on - strand, within Atu3056 at 55.312 kb on + strand, within Atu3056 at 55.334 kb on - strand, within Atu3056 at 55.440 kb on - strand, within Atu3056 at 55.466 kb on + strand, within Atu3056 at 55.480 kb on + strand, within Atu3056 at 55.492 kb on + strand, within Atu3056 at 55.550 kb on - strand, within Atu3056 at 55.575 kb on - strand, within Atu3056 at 55.576 kb on + strand, within Atu3056 at 55.583 kb on + strand, within Atu3056 at 55.666 kb on + strand, within Atu3056 at 55.800 kb on - strand, within Atu3056
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.05 mM remove 52,544 - Atu3054 0.32 -0.5 52,559 + Atu3054 0.34 -0.9 52,561 + Atu3054 0.34 -0.9 52,567 - Atu3054 0.34 -0.1 52,571 - Atu3054 0.35 +0.0 52,733 + Atu3054 0.48 +0.3 52,773 - Atu3054 0.52 +0.4 52,824 + Atu3054 0.56 -0.4 52,824 + Atu3054 0.56 -0.2 52,824 + Atu3054 0.56 +0.0 52,832 - Atu3054 0.57 -0.3 52,913 + Atu3054 0.64 +0.7 52,961 + Atu3054 0.68 -0.0 53,012 - Atu3054 0.72 -1.2 53,082 - Atu3054 0.78 -0.6 53,097 + Atu3054 0.80 -2.0 53,097 + Atu3054 0.80 -0.4 53,115 + Atu3054 0.81 -0.9 53,148 - Atu3054 0.84 -0.5 53,295 - -0.6 53,319 + -0.0 53,394 - -0.2 53,405 + -0.1 53,407 + -0.3 53,407 + -0.3 53,424 + -0.7 53,424 + -0.2 53,424 + +0.7 53,432 - -1.0 53,432 - -0.9 53,448 + -0.8 53,524 - -0.4 53,656 + -0.5 53,664 + Atu3055 0.10 -0.1 53,691 - Atu3055 0.12 -0.2 53,872 + Atu3055 0.27 -0.4 53,940 - Atu3055 0.32 -0.9 54,063 + Atu3055 0.42 -0.8 54,063 + Atu3055 0.42 -0.1 54,071 - Atu3055 0.42 -2.0 54,076 + Atu3055 0.43 -0.5 54,170 - Atu3055 0.50 -1.3 54,187 + Atu3055 0.52 +0.2 54,281 - Atu3055 0.59 +0.4 54,314 + Atu3055 0.62 -0.8 54,351 - Atu3055 0.64 -0.9 54,409 + Atu3055 0.69 -0.2 54,412 - Atu3055 0.69 -2.8 54,415 - Atu3055 0.70 +0.0 54,464 + Atu3055 0.73 +1.4 54,483 - Atu3055 0.75 -0.4 54,505 + Atu3055 0.77 -0.7 54,534 - Atu3055 0.79 +0.4 54,589 + Atu3055 0.83 -1.7 54,589 + Atu3055 0.83 -0.0 54,676 - -0.1 54,698 + -0.8 54,710 + -0.6 55,003 + -2.2 55,003 + -0.3 55,003 + -1.2 55,011 - -0.5 55,021 - -0.5 55,110 - Atu3056 0.13 -0.7 55,117 - Atu3056 0.14 -0.1 55,255 + Atu3056 0.21 -0.7 55,260 + Atu3056 0.21 +0.2 55,269 + Atu3056 0.22 +0.5 55,300 - Atu3056 0.23 +0.4 55,312 + Atu3056 0.24 -1.0 55,334 - Atu3056 0.25 +0.2 55,440 - Atu3056 0.30 -0.7 55,466 + Atu3056 0.32 -0.2 55,480 + Atu3056 0.32 +0.9 55,492 + Atu3056 0.33 -0.0 55,550 - Atu3056 0.36 +0.1 55,575 - Atu3056 0.37 +0.9 55,576 + Atu3056 0.37 -0.9 55,583 + Atu3056 0.38 -0.3 55,666 + Atu3056 0.42 -1.2 55,800 - Atu3056 0.49 +0.2
Or see this region's nucleotide sequence