Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 210 nucleotides GFF844 and GFF845 overlap by 4 nucleotides GFF845 and GFF846 are separated by 104 nucleotides
GFF843 - FIG01200701: possible membrane protein, at 25,036 to 25,338
GFF843
GFF844 - YjfP protein, at 25,549 to 26,298
GFF844
GFF845 - Ascorbate utilization transcriptional regulator UlaR, HTH-type, at 26,295 to 27,050
GFF845
GFF846 - Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G), at 27,155 to 28,219
GFF846
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 25.304 kb on - strand, within GFF843 at 25.304 kb on - strand, within GFF843 at 25.316 kb on - strand at 25.339 kb on - strand at 25.339 kb on - strand at 25.345 kb on - strand at 25.371 kb on - strand at 25.371 kb on - strand at 25.378 kb on + strand at 25.415 kb on + strand at 25.416 kb on - strand at 25.482 kb on + strand at 25.512 kb on - strand at 25.554 kb on - strand at 25.575 kb on - strand at 25.590 kb on - strand at 25.592 kb on + strand at 25.592 kb on + strand at 25.592 kb on + strand at 25.593 kb on - strand at 25.593 kb on - strand at 25.646 kb on - strand, within GFF844 at 25.646 kb on - strand, within GFF844 at 25.677 kb on + strand, within GFF844 at 25.677 kb on + strand, within GFF844 at 25.678 kb on - strand, within GFF844 at 25.830 kb on - strand, within GFF844 at 25.830 kb on - strand, within GFF844 at 25.830 kb on - strand, within GFF844 at 25.920 kb on + strand, within GFF844 at 25.921 kb on - strand, within GFF844 at 25.921 kb on - strand, within GFF844 at 25.921 kb on - strand, within GFF844 at 25.921 kb on - strand, within GFF844 at 26.050 kb on - strand, within GFF844 at 26.064 kb on - strand, within GFF844 at 26.247 kb on + strand at 26.308 kb on - strand at 26.432 kb on + strand, within GFF845 at 26.563 kb on + strand, within GFF845 at 26.613 kb on - strand, within GFF845 at 26.613 kb on - strand, within GFF845 at 26.633 kb on + strand, within GFF845 at 26.634 kb on - strand, within GFF845 at 26.665 kb on + strand, within GFF845 at 26.754 kb on - strand, within GFF845 at 27.401 kb on - strand, within GFF846 at 27.401 kb on - strand, within GFF846 at 27.423 kb on - strand, within GFF846 at 27.525 kb on + strand, within GFF846 at 27.526 kb on - strand, within GFF846 at 27.534 kb on + strand, within GFF846 at 27.555 kb on + strand, within GFF846 at 27.585 kb on + strand, within GFF846 at 27.589 kb on + strand, within GFF846 at 27.600 kb on - strand, within GFF846 at 27.600 kb on - strand, within GFF846 at 27.827 kb on + strand, within GFF846 at 27.828 kb on - strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.047 kb on - strand, within GFF846
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 25,304 - GFF843 0.88 +0.7 25,304 - GFF843 0.88 +0.3 25,316 - +0.1 25,339 - +0.1 25,339 - -0.1 25,345 - +0.2 25,371 - -1.9 25,371 - -0.0 25,378 + +0.3 25,415 + +0.1 25,416 - +0.3 25,482 + +0.3 25,512 - -0.2 25,554 - -0.2 25,575 - -0.0 25,590 - -0.2 25,592 + -0.6 25,592 + +0.1 25,592 + -0.2 25,593 - -0.2 25,593 - -0.4 25,646 - GFF844 0.13 -0.1 25,646 - GFF844 0.13 -0.7 25,677 + GFF844 0.17 +0.2 25,677 + GFF844 0.17 +0.4 25,678 - GFF844 0.17 +0.2 25,830 - GFF844 0.37 +0.5 25,830 - GFF844 0.37 +0.0 25,830 - GFF844 0.37 +0.7 25,920 + GFF844 0.49 -0.0 25,921 - GFF844 0.50 +0.4 25,921 - GFF844 0.50 -0.6 25,921 - GFF844 0.50 +0.3 25,921 - GFF844 0.50 -0.3 26,050 - GFF844 0.67 -0.4 26,064 - GFF844 0.69 +0.2 26,247 + -0.1 26,308 - -0.4 26,432 + GFF845 0.18 -0.6 26,563 + GFF845 0.35 -1.3 26,613 - GFF845 0.42 -1.4 26,613 - GFF845 0.42 +0.4 26,633 + GFF845 0.45 -1.0 26,634 - GFF845 0.45 -0.8 26,665 + GFF845 0.49 -0.2 26,754 - GFF845 0.61 -0.9 27,401 - GFF846 0.23 +0.1 27,401 - GFF846 0.23 -0.5 27,423 - GFF846 0.25 -0.2 27,525 + GFF846 0.35 +0.1 27,526 - GFF846 0.35 +0.6 27,534 + GFF846 0.36 -0.4 27,555 + GFF846 0.38 +0.1 27,585 + GFF846 0.40 +0.3 27,589 + GFF846 0.41 -0.2 27,600 - GFF846 0.42 +0.1 27,600 - GFF846 0.42 +0.2 27,827 + GFF846 0.63 +0.7 27,828 - GFF846 0.63 +0.0 28,046 + GFF846 0.84 -0.3 28,046 + GFF846 0.84 +0.3 28,046 + GFF846 0.84 +0.1 28,047 - GFF846 0.84 +0.2
Or see this region's nucleotide sequence