Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF755

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF752 and GFF753 are separated by 31 nucleotidesGFF753 and GFF754 are separated by 169 nucleotidesGFF754 and GFF755 overlap by 17 nucleotidesGFF755 and GFF756 are separated by 57 nucleotides GFF752 - Inner membrane protein, at 111,804 to 112,106 GFF752 GFF753 - Glutaredoxin 1, at 112,138 to 112,401 GFF753 GFF754 - YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase, at 112,571 to 112,861 GFF754 GFF755 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 112,845 to 113,567 GFF755 GFF756 - Ribosomal protein S6 glutaminyl transferase, at 113,625 to 114,527 GFF756 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1at 112.015 kb on + strand, within GFF752at 112.234 kb on + strand, within GFF753at 112.296 kb on + strand, within GFF753at 112.365 kb on - strand, within GFF753at 112.395 kb on + strandat 112.396 kb on - strandat 112.401 kb on + strandat 112.401 kb on + strandat 112.401 kb on + strandat 112.441 kb on + strandat 112.442 kb on - strandat 112.505 kb on + strandat 112.507 kb on + strandat 112.507 kb on + strandat 112.539 kb on - strandat 112.670 kb on - strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.934 kb on + strand, within GFF755at 112.986 kb on - strand, within GFF755at 113.227 kb on - strand, within GFF755at 113.291 kb on - strand, within GFF755at 113.439 kb on + strand, within GFF755at 113.443 kb on - strand, within GFF755at 113.443 kb on - strand, within GFF755at 113.460 kb on - strand, within GFF755at 113.536 kb on - strandat 113.536 kb on - strandat 113.566 kb on - strandat 113.584 kb on + strandat 113.717 kb on - strand, within GFF756at 113.717 kb on - strand, within GFF756at 113.737 kb on - strand, within GFF756at 113.739 kb on - strand, within GFF756at 113.748 kb on - strand, within GFF756at 113.772 kb on + strand, within GFF756at 113.832 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.907 kb on - strand, within GFF756at 114.015 kb on - strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.160 kb on - strand, within GFF756at 114.173 kb on + strand, within GFF756

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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112,015 + GFF752 0.70 +0.3
112,234 + GFF753 0.36 -0.0
112,296 + GFF753 0.60 -0.1
112,365 - GFF753 0.86 +0.3
112,395 + -0.4
112,396 - +0.8
112,401 + -2.2
112,401 + -0.1
112,401 + -0.3
112,441 + +0.1
112,442 - +1.0
112,505 + +0.4
112,507 + +0.6
112,507 + +0.4
112,539 - +0.2
112,670 - GFF754 0.34 -0.1
112,707 + GFF754 0.47 -0.3
112,707 + GFF754 0.47 +0.1
112,934 + GFF755 0.12 -0.3
112,986 - GFF755 0.20 -0.1
113,227 - GFF755 0.53 +0.3
113,291 - GFF755 0.62 -0.5
113,439 + GFF755 0.82 -0.1
113,443 - GFF755 0.83 -0.2
113,443 - GFF755 0.83 -0.3
113,460 - GFF755 0.85 -0.4
113,536 - +0.1
113,536 - +0.5
113,566 - -0.3
113,584 + +0.4
113,717 - GFF756 0.10 -0.0
113,717 - GFF756 0.10 +0.2
113,737 - GFF756 0.12 -0.3
113,739 - GFF756 0.13 -0.0
113,748 - GFF756 0.14 -0.0
113,772 + GFF756 0.16 +0.2
113,832 - GFF756 0.23 +0.0
113,839 - GFF756 0.24 -0.1
113,839 - GFF756 0.24 -0.4
113,907 - GFF756 0.31 +0.2
114,015 - GFF756 0.43 -0.7
114,159 + GFF756 0.59 +0.6
114,159 + GFF756 0.59 +0.8
114,160 - GFF756 0.59 -0.2
114,173 + GFF756 0.61 -0.3

Or see this region's nucleotide sequence