Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF664

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF663 and GFF664 overlap by 4 nucleotidesGFF664 and GFF665 are separated by 44 nucleotidesGFF665 and GFF666 are separated by 196 nucleotides GFF663 - Imidazolonepropionase (EC 3.5.2.7), at 18,905 to 20,128 GFF663 GFF664 - Formiminoglutamase (EC 3.5.3.8), at 20,125 to 21,066 GFF664 GFF665 - Histidine utilization repressor, at 21,111 to 21,836 GFF665 GFF666 - Urocanate hydratase (EC 4.2.1.49), at 22,033 to 23,178 GFF666 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1at 19.444 kb on + strand, within GFF663at 19.478 kb on + strand, within GFF663at 19.614 kb on + strand, within GFF663at 19.713 kb on - strand, within GFF663at 20.067 kb on + strandat 20.068 kb on - strandat 20.068 kb on - strandat 20.068 kb on - strandat 20.072 kb on + strandat 20.073 kb on - strandat 20.073 kb on - strandat 20.094 kb on + strandat 20.178 kb on + strandat 20.179 kb on - strandat 20.180 kb on + strandat 20.180 kb on + strandat 20.181 kb on - strandat 20.181 kb on - strandat 20.581 kb on - strand, within GFF664at 20.842 kb on - strand, within GFF664at 20.855 kb on + strand, within GFF664at 20.855 kb on + strand, within GFF664at 21.114 kb on + strandat 21.114 kb on + strandat 21.115 kb on - strandat 21.316 kb on + strand, within GFF665at 21.522 kb on + strand, within GFF665at 21.600 kb on + strand, within GFF665at 21.663 kb on - strand, within GFF665at 21.710 kb on + strand, within GFF665at 21.787 kb on + strandat 21.827 kb on + strandat 21.935 kb on - strandat 22.015 kb on + strandat 22.016 kb on - strandat 22.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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19,444 + GFF663 0.44 -0.1
19,478 + GFF663 0.47 -0.4
19,614 + GFF663 0.58 -0.0
19,713 - GFF663 0.66 +0.8
20,067 + +0.2
20,068 - +0.1
20,068 - -0.0
20,068 - -1.1
20,072 + -0.6
20,073 - -2.3
20,073 - -0.0
20,094 + +0.4
20,178 + +0.1
20,179 - -0.1
20,180 + +0.2
20,180 + -0.8
20,181 - +0.1
20,181 - -0.2
20,581 - GFF664 0.48 -0.0
20,842 - GFF664 0.76 -0.3
20,855 + GFF664 0.77 -0.4
20,855 + GFF664 0.77 -0.9
21,114 + -0.3
21,114 + +0.1
21,115 - -0.5
21,316 + GFF665 0.28 -0.1
21,522 + GFF665 0.57 +0.3
21,600 + GFF665 0.67 -0.3
21,663 - GFF665 0.76 +0.3
21,710 + GFF665 0.83 -0.4
21,787 + -0.2
21,827 + -0.4
21,935 - -0.1
22,015 + -1.5
22,016 - -0.3
22,048 + -0.0

Or see this region's nucleotide sequence