Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF503 and GFF504 are separated by 627 nucleotides GFF504 and GFF505 are separated by 5 nucleotides GFF505 and GFF506 are separated by 280 nucleotides
GFF503 - LysR family transcriptional regulator YhjC, at 231,478 to 232,380
GFF503
GFF504 - Putative regulator, at 233,008 to 233,610
GFF504
GFF505 - Phage-like lysozyme, at 233,616 to 233,972
GFF505
GFF506 - Putative inner membrane protein, at 234,253 to 235,842
GFF506
Position (kb) 233
234 Strain fitness (log2 ratio) -1
0
1 at 232.086 kb on + strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.091 kb on - strand, within GFF503 at 232.203 kb on + strand, within GFF503 at 232.450 kb on + strand at 232.620 kb on + strand at 232.620 kb on + strand at 232.621 kb on - strand at 232.621 kb on - strand at 232.625 kb on - strand at 232.632 kb on - strand at 232.766 kb on - strand at 233.238 kb on + strand, within GFF504 at 233.241 kb on + strand, within GFF504 at 233.511 kb on + strand, within GFF504 at 233.760 kb on + strand, within GFF505 at 233.760 kb on + strand, within GFF505 at 233.819 kb on + strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.877 kb on - strand, within GFF505 at 233.924 kb on + strand, within GFF505 at 234.001 kb on + strand at 234.001 kb on + strand at 234.185 kb on - strand at 234.188 kb on + strand at 234.204 kb on + strand at 234.252 kb on - strand at 234.298 kb on - strand at 234.477 kb on + strand, within GFF506 at 234.477 kb on + strand, within GFF506 at 234.518 kb on - strand, within GFF506 at 234.590 kb on + strand, within GFF506 at 234.591 kb on - strand, within GFF506
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 232,086 + GFF503 0.67 -0.0 232,087 - GFF503 0.67 -0.2 232,087 - GFF503 0.67 +0.9 232,091 - GFF503 0.68 -0.2 232,203 + GFF503 0.80 -1.1 232,450 + -0.4 232,620 + +0.2 232,620 + -1.1 232,621 - +0.3 232,621 - -0.2 232,625 - -1.1 232,632 - -0.1 232,766 - -0.4 233,238 + GFF504 0.38 -0.8 233,241 + GFF504 0.39 -0.2 233,511 + GFF504 0.83 -0.8 233,760 + GFF505 0.40 +0.8 233,760 + GFF505 0.40 +1.2 233,819 + GFF505 0.57 +0.1 233,853 - GFF505 0.66 -0.9 233,853 - GFF505 0.66 -0.2 233,853 - GFF505 0.66 -0.0 233,877 - GFF505 0.73 -0.6 233,924 + GFF505 0.86 -0.1 234,001 + +0.7 234,001 + -0.2 234,185 - +0.4 234,188 + -0.0 234,204 + +0.2 234,252 - +0.0 234,298 - +0.8 234,477 + GFF506 0.14 +1.1 234,477 + GFF506 0.14 -0.1 234,518 - GFF506 0.17 +0.0 234,590 + GFF506 0.21 +0.0 234,591 - GFF506 0.21 +0.3
Or see this region's nucleotide sequence