Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4893 and GFF4894 are separated by 77 nucleotides GFF4894 and GFF4895 are separated by 142 nucleotides GFF4895 and GFF4896 are separated by 9 nucleotides
GFF4893 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 11,064 to 11,558
GFF4893
GFF4894 - Cell division protein FtsK, at 11,636 to 15,670
GFF4894
GFF4895 - Outer membrane lipoprotein carrier protein LolA, at 15,813 to 16,424
GFF4895
GFF4896 - FIG065221: Holliday junction DNA helicase, at 16,434 to 17,777
GFF4896
Position (kb)
11
12
13
14
15
16 Strain fitness (log2 ratio)
-2
-1
0
1 at 10.813 kb on + strand at 10.828 kb on + strand at 10.840 kb on + strand at 10.871 kb on + strand at 11.020 kb on - strand at 11.035 kb on + strand at 11.060 kb on - strand at 11.060 kb on - strand at 11.062 kb on + strand at 11.062 kb on + strand at 11.063 kb on - strand at 11.069 kb on - strand at 11.072 kb on + strand at 11.123 kb on + strand, within GFF4893 at 11.123 kb on + strand, within GFF4893 at 11.147 kb on + strand, within GFF4893 at 11.147 kb on + strand, within GFF4893 at 11.147 kb on + strand, within GFF4893 at 11.168 kb on + strand, within GFF4893 at 11.234 kb on + strand, within GFF4893 at 11.268 kb on + strand, within GFF4893 at 11.343 kb on - strand, within GFF4893 at 11.406 kb on + strand, within GFF4893 at 11.426 kb on - strand, within GFF4893 at 11.502 kb on + strand, within GFF4893 at 11.506 kb on + strand, within GFF4893 at 11.546 kb on + strand at 14.477 kb on + strand, within GFF4894 at 15.677 kb on - strand at 16.418 kb on + strand at 16.467 kb on - strand at 16.515 kb on + strand at 16.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 10,813 + +0.3 10,828 + +0.5 10,840 + -0.6 10,871 + +0.5 11,020 - +0.2 11,035 + +0.8 11,060 - -0.5 11,060 - +0.6 11,062 + +0.3 11,062 + -0.7 11,063 - -0.3 11,069 - +1.1 11,072 + +0.4 11,123 + GFF4893 0.12 -0.4 11,123 + GFF4893 0.12 -0.4 11,147 + GFF4893 0.17 -0.0 11,147 + GFF4893 0.17 +0.6 11,147 + GFF4893 0.17 +0.1 11,168 + GFF4893 0.21 +0.3 11,234 + GFF4893 0.34 +0.7 11,268 + GFF4893 0.41 +0.5 11,343 - GFF4893 0.56 -0.3 11,406 + GFF4893 0.69 -0.8 11,426 - GFF4893 0.73 -0.7 11,502 + GFF4893 0.88 -0.3 11,506 + GFF4893 0.89 -0.1 11,546 + +0.3 14,477 + GFF4894 0.70 -0.9 15,677 - +0.1 16,418 + +0.4 16,467 - -2.0 16,515 + +0.3 16,516 - -0.0
Or see this region's nucleotide sequence