Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3704

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3701 and GFF3702 are separated by 109 nucleotidesGFF3702 and GFF3703 are separated by 0 nucleotidesGFF3703 and GFF3704 overlap by 4 nucleotidesGFF3704 and GFF3705 are separated by 298 nucleotides GFF3701 - Nitrite transporter NirC, at 7,485 to 8,294 GFF3701 GFF3702 - hypothetical protein, at 8,404 to 8,559 GFF3702 GFF3703 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 8,560 to 8,886 GFF3703 GFF3704 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 8,883 to 11,390 GFF3704 GFF3705 - TsgA protein homolog, at 11,689 to 12,870 GFF3705 Position (kb) 8 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 7.927 kb on + strand, within GFF3701at 7.985 kb on + strand, within GFF3701at 8.127 kb on + strand, within GFF3701at 8.185 kb on + strand, within GFF3701at 8.186 kb on - strand, within GFF3701at 8.186 kb on - strand, within GFF3701at 8.273 kb on + strandat 8.366 kb on + strandat 8.366 kb on + strandat 8.374 kb on + strandat 8.374 kb on + strandat 8.375 kb on - strandat 8.375 kb on - strandat 8.501 kb on + strand, within GFF3702at 8.590 kb on + strandat 8.638 kb on + strand, within GFF3703at 8.786 kb on + strand, within GFF3703at 8.787 kb on - strand, within GFF3703at 8.923 kb on + strandat 9.208 kb on + strand, within GFF3704at 9.209 kb on - strand, within GFF3704at 9.218 kb on + strand, within GFF3704at 9.233 kb on - strand, within GFF3704at 9.314 kb on - strand, within GFF3704at 9.668 kb on + strand, within GFF3704at 9.733 kb on + strand, within GFF3704at 9.734 kb on - strand, within GFF3704at 9.777 kb on - strand, within GFF3704at 9.855 kb on - strand, within GFF3704at 9.956 kb on - strand, within GFF3704at 10.106 kb on + strand, within GFF3704at 10.350 kb on + strand, within GFF3704at 10.395 kb on - strand, within GFF3704at 10.395 kb on - strand, within GFF3704at 10.597 kb on + strand, within GFF3704at 10.598 kb on - strand, within GFF3704at 10.701 kb on - strand, within GFF3704at 11.177 kb on + strandat 11.206 kb on - strandat 11.272 kb on + strandat 11.405 kb on + strandat 11.597 kb on + strandat 11.688 kb on - strandat 11.728 kb on + strandat 11.925 kb on + strand, within GFF3705at 11.925 kb on + strand, within GFF3705at 11.938 kb on - strand, within GFF3705at 11.939 kb on + strand, within GFF3705at 11.939 kb on + strand, within GFF3705at 11.940 kb on - strand, within GFF3705at 11.940 kb on - strand, within GFF3705at 11.985 kb on + strand, within GFF3705at 11.986 kb on - strand, within GFF3705at 12.014 kb on + strand, within GFF3705at 12.108 kb on + strand, within GFF3705at 12.109 kb on - strand, within GFF3705at 12.109 kb on - strand, within GFF3705at 12.109 kb on - strand, within GFF3705at 12.110 kb on + strand, within GFF3705at 12.110 kb on + strand, within GFF3705at 12.111 kb on - strand, within GFF3705at 12.196 kb on - strand, within GFF3705at 12.202 kb on + strand, within GFF3705at 12.203 kb on - strand, within GFF3705at 12.218 kb on + strand, within GFF3705at 12.374 kb on + strand, within GFF3705at 12.375 kb on - strand, within GFF3705

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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7,927 + GFF3701 0.55 +0.1
7,985 + GFF3701 0.62 -0.2
8,127 + GFF3701 0.79 -0.2
8,185 + GFF3701 0.86 -0.1
8,186 - GFF3701 0.87 -0.5
8,186 - GFF3701 0.87 +0.6
8,273 + -0.5
8,366 + +0.9
8,366 + -0.5
8,374 + +0.6
8,374 + +0.1
8,375 - +0.3
8,375 - -0.3
8,501 + GFF3702 0.62 -0.1
8,590 + -0.1
8,638 + GFF3703 0.24 +0.1
8,786 + GFF3703 0.69 +0.3
8,787 - GFF3703 0.69 +0.1
8,923 + +0.2
9,208 + GFF3704 0.13 -0.3
9,209 - GFF3704 0.13 +0.8
9,218 + GFF3704 0.13 -0.3
9,233 - GFF3704 0.14 +0.1
9,314 - GFF3704 0.17 -0.2
9,668 + GFF3704 0.31 +0.7
9,733 + GFF3704 0.34 -0.3
9,734 - GFF3704 0.34 +0.0
9,777 - GFF3704 0.36 +1.2
9,855 - GFF3704 0.39 +0.3
9,956 - GFF3704 0.43 +0.1
10,106 + GFF3704 0.49 +1.3
10,350 + GFF3704 0.58 -0.2
10,395 - GFF3704 0.60 +0.9
10,395 - GFF3704 0.60 +0.4
10,597 + GFF3704 0.68 +0.7
10,598 - GFF3704 0.68 -0.2
10,701 - GFF3704 0.72 +0.3
11,177 + -0.4
11,206 - +0.3
11,272 + -0.0
11,405 + +0.0
11,597 + +0.4
11,688 - +0.4
11,728 + +0.3
11,925 + GFF3705 0.20 -1.8
11,925 + GFF3705 0.20 -1.0
11,938 - GFF3705 0.21 -0.7
11,939 + GFF3705 0.21 +0.1
11,939 + GFF3705 0.21 -0.3
11,940 - GFF3705 0.21 +1.4
11,940 - GFF3705 0.21 +0.0
11,985 + GFF3705 0.25 +0.2
11,986 - GFF3705 0.25 +0.6
12,014 + GFF3705 0.27 +0.4
12,108 + GFF3705 0.35 -0.1
12,109 - GFF3705 0.36 +0.7
12,109 - GFF3705 0.36 +0.5
12,109 - GFF3705 0.36 +0.1
12,110 + GFF3705 0.36 -0.2
12,110 + GFF3705 0.36 -0.3
12,111 - GFF3705 0.36 -0.2
12,196 - GFF3705 0.43 +0.0
12,202 + GFF3705 0.43 -0.3
12,203 - GFF3705 0.43 +0.1
12,218 + GFF3705 0.45 +0.0
12,374 + GFF3705 0.58 -0.5
12,375 - GFF3705 0.58 +0.7

Or see this region's nucleotide sequence