Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3504 and GFF3505 are separated by 10 nucleotides GFF3505 and GFF3506 are separated by 124 nucleotides GFF3506 and GFF3507 are separated by 12 nucleotides GFF3507 and GFF3508 are separated by 43 nucleotides
GFF3504 - PTS system, cellobiose-specific IIA component (EC 2.7.1.69), at 255,672 to 256,019
GFF3504
GFF3505 - Transcriptional regulator, AraC family, at 256,030 to 256,872
GFF3505
GFF3506 - 6-phospho-beta-glucosidase (EC 3.2.1.86), at 256,997 to 258,352
GFF3506
GFF3507 - Cellobiose phosphotransferase system YdjC-like protein, at 258,365 to 259,123
GFF3507
GFF3508 - Catalase (EC 1.11.1.6), at 259,167 to 261,419
GFF3508
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -1
0
1 at 256.113 kb on + strand at 256.117 kb on + strand, within GFF3505 at 256.118 kb on - strand, within GFF3505 at 256.119 kb on + strand, within GFF3505 at 256.160 kb on - strand, within GFF3505 at 256.163 kb on - strand, within GFF3505 at 256.192 kb on + strand, within GFF3505 at 256.407 kb on + strand, within GFF3505 at 256.487 kb on - strand, within GFF3505 at 256.667 kb on - strand, within GFF3505 at 257.822 kb on + strand, within GFF3506 at 257.977 kb on + strand, within GFF3506 at 258.151 kb on + strand, within GFF3506 at 258.360 kb on - strand at 258.365 kb on - strand at 258.441 kb on - strand, within GFF3507 at 258.490 kb on + strand, within GFF3507 at 258.706 kb on - strand, within GFF3507 at 258.751 kb on + strand, within GFF3507 at 258.751 kb on + strand, within GFF3507 at 258.752 kb on - strand, within GFF3507 at 258.752 kb on - strand, within GFF3507 at 258.752 kb on - strand, within GFF3507 at 258.811 kb on - strand, within GFF3507 at 258.881 kb on - strand, within GFF3507 at 258.881 kb on - strand, within GFF3507 at 259.020 kb on - strand, within GFF3507 at 259.035 kb on + strand, within GFF3507
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 256,113 + -0.5 256,117 + GFF3505 0.10 -0.5 256,118 - GFF3505 0.10 +0.1 256,119 + GFF3505 0.11 +0.1 256,160 - GFF3505 0.15 -0.5 256,163 - GFF3505 0.16 +0.3 256,192 + GFF3505 0.19 -0.3 256,407 + GFF3505 0.45 -0.2 256,487 - GFF3505 0.54 +0.4 256,667 - GFF3505 0.76 -0.5 257,822 + GFF3506 0.61 -0.6 257,977 + GFF3506 0.72 -1.2 258,151 + GFF3506 0.85 -0.1 258,360 - +0.0 258,365 - +0.6 258,441 - GFF3507 0.10 +0.8 258,490 + GFF3507 0.16 +1.1 258,706 - GFF3507 0.45 -0.1 258,751 + GFF3507 0.51 +0.2 258,751 + GFF3507 0.51 -0.3 258,752 - GFF3507 0.51 +0.9 258,752 - GFF3507 0.51 -0.2 258,752 - GFF3507 0.51 -0.9 258,811 - GFF3507 0.59 -1.4 258,881 - GFF3507 0.68 +0.3 258,881 - GFF3507 0.68 -0.8 259,020 - GFF3507 0.86 -1.4 259,035 + GFF3507 0.88 -0.1
Or see this region's nucleotide sequence