Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2920 and GFF2921 are separated by 87 nucleotides GFF2921 and GFF2922 are separated by 155 nucleotides GFF2922 and GFF2923 are separated by 53 nucleotides GFF2923 and GFF2924 are separated by 65 nucleotides
GFF2920 - Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552, at 8,204 to 8,830
GFF2920
GFF2921 - FIG004454: RNA binding protein, at 8,918 to 9,250
GFF2921
GFF2922 - Transcription elongation factor GreA, at 9,406 to 9,882
GFF2922
GFF2923 - hypothetical protein, at 9,936 to 10,064
GFF2923
GFF2924 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 10,130 to 11,563
GFF2924
Position (kb)
9
10 Strain fitness (log2 ratio)
-1
0
1 at 8.888 kb on - strand at 8.988 kb on + strand, within GFF2921 at 8.989 kb on - strand, within GFF2921 at 9.079 kb on - strand, within GFF2921 at 9.220 kb on + strand at 9.220 kb on + strand at 9.371 kb on + strand at 9.376 kb on + strand at 9.394 kb on - strand at 9.740 kb on + strand, within GFF2922 at 10.015 kb on - strand, within GFF2923 at 10.092 kb on - strand at 10.094 kb on + strand at 10.095 kb on - strand at 10.095 kb on - strand at 10.095 kb on - strand at 10.169 kb on - strand at 10.171 kb on - strand at 10.288 kb on + strand, within GFF2924 at 10.483 kb on + strand, within GFF2924 at 10.484 kb on - strand, within GFF2924 at 10.665 kb on - strand, within GFF2924 at 10.690 kb on - strand, within GFF2924 at 10.697 kb on - strand, within GFF2924 at 10.775 kb on + strand, within GFF2924 at 10.815 kb on - strand, within GFF2924
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 8,888 - +0.5 8,988 + GFF2921 0.21 +1.1 8,989 - GFF2921 0.21 +0.4 9,079 - GFF2921 0.48 +0.0 9,220 + +0.2 9,220 + +0.5 9,371 + -0.0 9,376 + +0.3 9,394 - +0.4 9,740 + GFF2922 0.70 -0.6 10,015 - GFF2923 0.61 +0.0 10,092 - -1.7 10,094 + -1.0 10,095 - +0.2 10,095 - -0.3 10,095 - +0.4 10,169 - -0.9 10,171 - +0.7 10,288 + GFF2924 0.11 +0.1 10,483 + GFF2924 0.25 -0.6 10,484 - GFF2924 0.25 -0.1 10,665 - GFF2924 0.37 -0.3 10,690 - GFF2924 0.39 -0.1 10,697 - GFF2924 0.40 +0.2 10,775 + GFF2924 0.45 -0.1 10,815 - GFF2924 0.48 +0.3
Or see this region's nucleotide sequence