Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2629 and GFF2630 are separated by 270 nucleotides GFF2630 and GFF2631 are separated by 116 nucleotides GFF2631 and GFF2632 are separated by 63 nucleotides
GFF2629 - Putative SAM-dependent methyltransferases, at 154,508 to 155,170
GFF2629
GFF2630 - Cytochrome b(561), at 155,441 to 155,971
GFF2630
GFF2631 - Protein ydcF, at 156,088 to 156,888
GFF2631
GFF2632 - ATP-dependent RNA helicase HrpA (EC 3.6.4.13), at 156,952 to 160,854
GFF2632
Position (kb) 155
156 Strain fitness (log2 ratio) -1
0
1 at 154.563 kb on + strand at 154.630 kb on - strand, within GFF2629 at 154.871 kb on + strand, within GFF2629 at 154.887 kb on + strand, within GFF2629 at 155.053 kb on + strand, within GFF2629 at 155.280 kb on + strand at 155.280 kb on + strand at 155.280 kb on + strand at 155.281 kb on - strand at 155.381 kb on + strand at 155.382 kb on - strand at 155.382 kb on - strand at 155.431 kb on + strand at 155.476 kb on + strand at 155.476 kb on + strand at 155.538 kb on + strand, within GFF2630 at 155.617 kb on + strand, within GFF2630 at 155.617 kb on + strand, within GFF2630 at 155.655 kb on + strand, within GFF2630 at 155.656 kb on - strand, within GFF2630 at 155.717 kb on + strand, within GFF2630 at 155.807 kb on + strand, within GFF2630 at 155.846 kb on - strand, within GFF2630 at 155.867 kb on - strand, within GFF2630 at 156.008 kb on - strand at 156.019 kb on - strand at 156.021 kb on - strand at 156.095 kb on - strand at 156.126 kb on + strand at 156.142 kb on + strand at 156.189 kb on + strand, within GFF2631 at 156.517 kb on - strand, within GFF2631 at 156.676 kb on + strand, within GFF2631 at 156.677 kb on - strand, within GFF2631 at 156.786 kb on - strand, within GFF2631 at 156.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 154,563 + +0.2 154,630 - GFF2629 0.18 -1.1 154,871 + GFF2629 0.55 -0.2 154,887 + GFF2629 0.57 +0.4 155,053 + GFF2629 0.82 -0.2 155,280 + +0.1 155,280 + +0.3 155,280 + -0.6 155,281 - -0.3 155,381 + -0.4 155,382 - +0.0 155,382 - -0.8 155,431 + -0.6 155,476 + -0.8 155,476 + +0.4 155,538 + GFF2630 0.18 +0.5 155,617 + GFF2630 0.33 -0.4 155,617 + GFF2630 0.33 +0.4 155,655 + GFF2630 0.40 +0.7 155,656 - GFF2630 0.40 +0.8 155,717 + GFF2630 0.52 -0.3 155,807 + GFF2630 0.69 +0.2 155,846 - GFF2630 0.76 +0.7 155,867 - GFF2630 0.80 +0.8 156,008 - +0.1 156,019 - +0.3 156,021 - -0.2 156,095 - -0.4 156,126 + +0.9 156,142 + -0.3 156,189 + GFF2631 0.13 -0.2 156,517 - GFF2631 0.54 -1.6 156,676 + GFF2631 0.73 -0.6 156,677 - GFF2631 0.74 +0.4 156,786 - GFF2631 0.87 -0.0 156,882 + +0.2
Or see this region's nucleotide sequence