Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2501 and GFF2502 are separated by 348 nucleotides GFF2502 and GFF2503 are separated by 220 nucleotides GFF2503 and GFF2504 are separated by 227 nucleotides
GFF2501 - FIG00638667: hypothetical protein, at 18,947 to 19,339
GFF2501
GFF2502 - hypothetical protein, at 19,688 to 19,810
GFF2502
GFF2503 - Putative transport protein, at 20,031 to 21,218
GFF2503
GFF2504 - Permease of the drug/metabolite transporter (DMT) superfamily, at 21,446 to 22,348
GFF2504
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 19.067 kb on + strand, within GFF2501 at 19.396 kb on - strand at 19.447 kb on - strand at 19.544 kb on + strand at 20.028 kb on + strand at 20.040 kb on - strand at 20.043 kb on - strand at 20.077 kb on - strand at 20.275 kb on + strand, within GFF2503 at 20.434 kb on + strand, within GFF2503 at 20.534 kb on + strand, within GFF2503 at 20.595 kb on + strand, within GFF2503 at 20.596 kb on - strand, within GFF2503 at 20.733 kb on + strand, within GFF2503 at 20.807 kb on - strand, within GFF2503 at 20.807 kb on - strand, within GFF2503 at 21.121 kb on + strand at 21.121 kb on + strand at 21.122 kb on - strand at 21.131 kb on + strand at 21.165 kb on + strand at 21.166 kb on - strand at 21.290 kb on - strand at 21.297 kb on - strand at 21.298 kb on + strand at 21.298 kb on + strand at 21.304 kb on - strand at 21.310 kb on - strand at 21.314 kb on + strand at 21.638 kb on + strand, within GFF2504 at 21.638 kb on + strand, within GFF2504 at 21.823 kb on - strand, within GFF2504 at 21.823 kb on - strand, within GFF2504 at 21.865 kb on + strand, within GFF2504 at 21.865 kb on + strand, within GFF2504 at 21.865 kb on + strand, within GFF2504 at 21.865 kb on + strand, within GFF2504 at 21.866 kb on - strand, within GFF2504 at 21.866 kb on - strand, within GFF2504 at 21.866 kb on - strand, within GFF2504 at 21.868 kb on - strand, within GFF2504 at 21.883 kb on + strand, within GFF2504 at 22.067 kb on - strand, within GFF2504 at 22.070 kb on - strand, within GFF2504 at 22.079 kb on - strand, within GFF2504 at 22.089 kb on + strand, within GFF2504
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 19,067 + GFF2501 0.31 +0.1 19,396 - -0.1 19,447 - -1.0 19,544 + +0.5 20,028 + +0.4 20,040 - -0.1 20,043 - -0.7 20,077 - -0.3 20,275 + GFF2503 0.21 +0.2 20,434 + GFF2503 0.34 +0.9 20,534 + GFF2503 0.42 -1.5 20,595 + GFF2503 0.47 +0.2 20,596 - GFF2503 0.48 +0.1 20,733 + GFF2503 0.59 +0.3 20,807 - GFF2503 0.65 +0.5 20,807 - GFF2503 0.65 +0.3 21,121 + +0.4 21,121 + +1.0 21,122 - -0.1 21,131 + -0.2 21,165 + -0.9 21,166 - -0.2 21,290 - +0.1 21,297 - +0.2 21,298 + +0.4 21,298 + +0.3 21,304 - +0.5 21,310 - +0.6 21,314 + -0.0 21,638 + GFF2504 0.21 +0.7 21,638 + GFF2504 0.21 -0.0 21,823 - GFF2504 0.42 +0.6 21,823 - GFF2504 0.42 -0.3 21,865 + GFF2504 0.46 +0.2 21,865 + GFF2504 0.46 -0.5 21,865 + GFF2504 0.46 +0.3 21,865 + GFF2504 0.46 -0.6 21,866 - GFF2504 0.47 -0.7 21,866 - GFF2504 0.47 +0.8 21,866 - GFF2504 0.47 -0.2 21,868 - GFF2504 0.47 -0.4 21,883 + GFF2504 0.48 +0.7 22,067 - GFF2504 0.69 -1.4 22,070 - GFF2504 0.69 +0.1 22,079 - GFF2504 0.70 +0.6 22,089 + GFF2504 0.71 -0.2
Or see this region's nucleotide sequence