Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1894 and GFF1895 are separated by 93 nucleotides GFF1895 and GFF1896 are separated by 91 nucleotides GFF1896 and GFF1897 are separated by 76 nucleotides GFF1897 and GFF1898 are separated by 10 nucleotides
GFF1894 - Aspartate aminotransferase (EC 2.6.1.1), at 88,385 to 89,599
GFF1894
GFF1895 - Nucleotidase YfbR, HD superfamily, at 89,693 to 90,292
GFF1895
GFF1896 - Putative transport protein, at 90,384 to 92,210
GFF1896
GFF1897 - Putative phosphatase YfbT, at 92,287 to 92,946
GFF1897
GFF1898 - FIG00361523: hypothetical protein, at 92,957 to 93,496
GFF1898
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -1
0
1
2 at 89.792 kb on - strand, within GFF1895 at 89.792 kb on - strand, within GFF1895 at 89.891 kb on + strand, within GFF1895 at 89.892 kb on - strand, within GFF1895 at 89.911 kb on - strand, within GFF1895 at 89.911 kb on - strand, within GFF1895 at 89.969 kb on + strand, within GFF1895 at 90.049 kb on + strand, within GFF1895 at 90.221 kb on + strand, within GFF1895 at 90.226 kb on + strand, within GFF1895 at 90.479 kb on - strand at 90.479 kb on - strand at 90.531 kb on - strand at 90.698 kb on + strand, within GFF1896 at 90.698 kb on + strand, within GFF1896 at 90.699 kb on - strand, within GFF1896 at 90.701 kb on - strand, within GFF1896 at 90.806 kb on + strand, within GFF1896 at 90.852 kb on - strand, within GFF1896 at 91.546 kb on + strand, within GFF1896 at 91.581 kb on - strand, within GFF1896 at 91.612 kb on - strand, within GFF1896 at 91.634 kb on + strand, within GFF1896 at 91.635 kb on - strand, within GFF1896 at 91.636 kb on + strand, within GFF1896 at 91.775 kb on + strand, within GFF1896 at 91.827 kb on - strand, within GFF1896 at 91.832 kb on + strand, within GFF1896 at 91.832 kb on + strand, within GFF1896 at 91.833 kb on - strand, within GFF1896 at 91.856 kb on + strand, within GFF1896 at 92.022 kb on + strand, within GFF1896 at 92.023 kb on - strand, within GFF1896 at 92.023 kb on - strand, within GFF1896 at 92.136 kb on - strand at 92.136 kb on - strand at 92.215 kb on + strand at 92.256 kb on + strand at 92.300 kb on - strand at 92.353 kb on - strand, within GFF1897 at 92.465 kb on - strand, within GFF1897 at 92.659 kb on - strand, within GFF1897 at 92.659 kb on - strand, within GFF1897 at 92.725 kb on + strand, within GFF1897 at 92.726 kb on - strand, within GFF1897 at 92.868 kb on + strand, within GFF1897 at 93.113 kb on + strand, within GFF1898 at 93.113 kb on + strand, within GFF1898 at 93.114 kb on - strand, within GFF1898 at 93.115 kb on + strand, within GFF1898 at 93.135 kb on + strand, within GFF1898 at 93.135 kb on + strand, within GFF1898
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 89,792 - GFF1895 0.17 +0.2 89,792 - GFF1895 0.17 +0.4 89,891 + GFF1895 0.33 -0.5 89,892 - GFF1895 0.33 +0.9 89,911 - GFF1895 0.36 +0.2 89,911 - GFF1895 0.36 -0.2 89,969 + GFF1895 0.46 -0.4 90,049 + GFF1895 0.59 -0.4 90,221 + GFF1895 0.88 +0.1 90,226 + GFF1895 0.89 -0.2 90,479 - +0.5 90,479 - +0.8 90,531 - +0.5 90,698 + GFF1896 0.17 +0.3 90,698 + GFF1896 0.17 -0.2 90,699 - GFF1896 0.17 +1.2 90,701 - GFF1896 0.17 -0.1 90,806 + GFF1896 0.23 +0.1 90,852 - GFF1896 0.26 -0.1 91,546 + GFF1896 0.64 +0.2 91,581 - GFF1896 0.66 -0.4 91,612 - GFF1896 0.67 +0.1 91,634 + GFF1896 0.68 +1.8 91,635 - GFF1896 0.68 +0.6 91,636 + GFF1896 0.69 +1.6 91,775 + GFF1896 0.76 +0.3 91,827 - GFF1896 0.79 +0.7 91,832 + GFF1896 0.79 -0.0 91,832 + GFF1896 0.79 +0.1 91,833 - GFF1896 0.79 +0.3 91,856 + GFF1896 0.81 +0.4 92,022 + GFF1896 0.90 +0.3 92,023 - GFF1896 0.90 -0.0 92,023 - GFF1896 0.90 +0.3 92,136 - +0.3 92,136 - +0.3 92,215 + +0.1 92,256 + +0.2 92,300 - +0.9 92,353 - GFF1897 0.10 +0.1 92,465 - GFF1897 0.27 +0.2 92,659 - GFF1897 0.56 +1.0 92,659 - GFF1897 0.56 +0.1 92,725 + GFF1897 0.66 +0.2 92,726 - GFF1897 0.67 +0.7 92,868 + GFF1897 0.88 +0.3 93,113 + GFF1898 0.29 -1.0 93,113 + GFF1898 0.29 -0.2 93,114 - GFF1898 0.29 +0.5 93,115 + GFF1898 0.29 +0.4 93,135 + GFF1898 0.33 -0.1 93,135 + GFF1898 0.33 +0.9
Or see this region's nucleotide sequence