Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF162

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF161 and GFF162 are separated by 384 nucleotidesGFF162 and GFF163 are separated by 830 nucleotides GFF161 - Acetolactate synthase large subunit (EC 2.2.1.6), at 151,531 to 153,192 GFF161 GFF162 - Probable transcriptional activator for leuABCD operon, at 153,577 to 154,521 GFF162 GFF163 - 2-isopropylmalate synthase (EC 2.3.3.13), at 155,352 to 156,164 GFF163 Position (kb) 153 154 155Strain fitness (log2 ratio) -1 0 1at 152.589 kb on - strand, within GFF161at 152.622 kb on - strand, within GFF161at 152.679 kb on + strand, within GFF161at 152.680 kb on - strand, within GFF161at 152.680 kb on - strand, within GFF161at 152.702 kb on + strand, within GFF161at 152.736 kb on - strand, within GFF161at 152.764 kb on - strand, within GFF161at 152.871 kb on + strand, within GFF161at 152.871 kb on + strand, within GFF161at 152.872 kb on - strand, within GFF161at 152.872 kb on - strand, within GFF161at 152.872 kb on - strand, within GFF161at 152.872 kb on - strand, within GFF161at 152.928 kb on - strand, within GFF161at 152.987 kb on + strand, within GFF161at 153.145 kb on + strandat 153.146 kb on - strandat 153.155 kb on + strandat 153.155 kb on + strandat 153.272 kb on - strandat 153.627 kb on + strandat 153.698 kb on - strand, within GFF162at 153.856 kb on - strand, within GFF162at 153.901 kb on - strand, within GFF162at 154.351 kb on + strand, within GFF162at 154.445 kb on - strandat 155.176 kb on + strandat 155.186 kb on + strandat 155.187 kb on - strandat 155.226 kb on - strandat 155.262 kb on + strandat 155.262 kb on + strandat 155.311 kb on + strandat 155.386 kb on + strandat 155.486 kb on - strand, within GFF163

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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152,589 - GFF161 0.64 -1.2
152,622 - GFF161 0.66 +0.2
152,679 + GFF161 0.69 -0.3
152,680 - GFF161 0.69 +0.1
152,680 - GFF161 0.69 -0.1
152,702 + GFF161 0.70 -0.1
152,736 - GFF161 0.73 -0.1
152,764 - GFF161 0.74 -0.0
152,871 + GFF161 0.81 +0.2
152,871 + GFF161 0.81 -0.0
152,872 - GFF161 0.81 +0.5
152,872 - GFF161 0.81 -0.0
152,872 - GFF161 0.81 +0.7
152,872 - GFF161 0.81 -0.2
152,928 - GFF161 0.84 +0.2
152,987 + GFF161 0.88 -0.1
153,145 + -0.3
153,146 - -0.0
153,155 + +0.3
153,155 + +0.0
153,272 - +0.4
153,627 + -0.1
153,698 - GFF162 0.13 -0.7
153,856 - GFF162 0.30 +0.1
153,901 - GFF162 0.34 -0.4
154,351 + GFF162 0.82 -0.2
154,445 - +0.3
155,176 + +0.2
155,186 + +0.7
155,187 - -0.7
155,226 - -0.5
155,262 + +0.0
155,262 + -0.0
155,311 + +0.3
155,386 + -0.0
155,486 - GFF163 0.16 +0.1

Or see this region's nucleotide sequence