Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1503 and GFF1504 are separated by 178 nucleotides GFF1504 and GFF1505 are separated by 153 nucleotides
GFF1503 - Lipoprotein nlpI precursor, at 9,421 to 10,305
GFF1503
GFF1504 - DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13), at 10,484 to 12,373
GFF1504
GFF1505 - Tryptophan-specific transport protein, at 12,527 to 13,771
GFF1505
Position (kb)
10
11
12
13 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 9.640 kb on - strand, within GFF1503 at 9.725 kb on + strand, within GFF1503 at 9.805 kb on + strand, within GFF1503 at 9.841 kb on + strand, within GFF1503 at 10.135 kb on + strand, within GFF1503 at 10.135 kb on + strand, within GFF1503 at 10.135 kb on + strand, within GFF1503 at 10.139 kb on + strand, within GFF1503 at 10.154 kb on + strand, within GFF1503 at 10.481 kb on + strand at 10.826 kb on + strand, within GFF1504 at 10.826 kb on + strand, within GFF1504 at 11.938 kb on + strand, within GFF1504 at 11.938 kb on + strand, within GFF1504 at 11.939 kb on - strand, within GFF1504 at 11.948 kb on + strand, within GFF1504 at 12.049 kb on + strand, within GFF1504 at 12.050 kb on - strand, within GFF1504 at 12.371 kb on + strand at 12.412 kb on - strand at 12.493 kb on + strand at 12.504 kb on + strand at 12.504 kb on + strand at 12.538 kb on + strand at 12.727 kb on + strand, within GFF1505 at 12.809 kb on - strand, within GFF1505 at 12.824 kb on + strand, within GFF1505 at 12.825 kb on - strand, within GFF1505 at 12.842 kb on + strand, within GFF1505 at 12.875 kb on - strand, within GFF1505 at 12.875 kb on - strand, within GFF1505 at 13.097 kb on - strand, within GFF1505 at 13.176 kb on - strand, within GFF1505
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 9,640 - GFF1503 0.25 -1.1 9,725 + GFF1503 0.34 -0.2 9,805 + GFF1503 0.43 +1.8 9,841 + GFF1503 0.47 +1.6 10,135 + GFF1503 0.81 -0.2 10,135 + GFF1503 0.81 +0.4 10,135 + GFF1503 0.81 -0.1 10,139 + GFF1503 0.81 -0.7 10,154 + GFF1503 0.83 +0.3 10,481 + -1.9 10,826 + GFF1504 0.18 -1.2 10,826 + GFF1504 0.18 -2.4 11,938 + GFF1504 0.77 +0.7 11,938 + GFF1504 0.77 -0.2 11,939 - GFF1504 0.77 -0.7 11,948 + GFF1504 0.77 -0.0 12,049 + GFF1504 0.83 -1.1 12,050 - GFF1504 0.83 -1.1 12,371 + +0.3 12,412 - +0.1 12,493 + -0.8 12,504 + +0.1 12,504 + +0.2 12,538 + -0.4 12,727 + GFF1505 0.16 -0.8 12,809 - GFF1505 0.23 -0.7 12,824 + GFF1505 0.24 -0.3 12,825 - GFF1505 0.24 -0.9 12,842 + GFF1505 0.25 -1.1 12,875 - GFF1505 0.28 -2.3 12,875 - GFF1505 0.28 -0.8 13,097 - GFF1505 0.46 -2.7 13,176 - GFF1505 0.52 -1.0
Or see this region's nucleotide sequence