Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1099

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1098 and GFF1099 are separated by 429 nucleotidesGFF1099 and GFF1100 are separated by 100 nucleotidesGFF1100 and GFF1101 are separated by 4 nucleotides GFF1098 - FIG074102: hypothetical protein, at 284,119 to 284,823 GFF1098 GFF1099 - type 1 fimbriae major subunit FimA, at 285,253 to 285,795 GFF1099 GFF1100 - chaperone FimC, at 285,896 to 286,582 GFF1100 GFF1101 - type 1 fimbriae anchoring protein FimD, at 286,587 to 289,208 GFF1101 Position (kb) 285 286Strain fitness (log2 ratio) -1 0 1at 284.309 kb on - strand, within GFF1098at 284.368 kb on - strand, within GFF1098at 284.401 kb on - strand, within GFF1098at 284.426 kb on - strand, within GFF1098at 284.695 kb on - strand, within GFF1098at 284.851 kb on + strandat 285.047 kb on - strandat 285.266 kb on + strandat 285.354 kb on - strand, within GFF1099at 285.623 kb on + strand, within GFF1099at 285.624 kb on - strand, within GFF1099at 285.887 kb on - strandat 285.890 kb on - strandat 286.166 kb on - strand, within GFF1100at 286.177 kb on + strand, within GFF1100at 286.306 kb on + strand, within GFF1100at 286.312 kb on - strand, within GFF1100at 286.419 kb on - strand, within GFF1100at 286.439 kb on + strand, within GFF1100at 286.439 kb on + strand, within GFF1100at 286.469 kb on - strand, within GFF1100at 286.587 kb on - strandat 286.699 kb on - strandat 286.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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284,309 - GFF1098 0.27 +0.7
284,368 - GFF1098 0.35 -0.0
284,401 - GFF1098 0.40 +0.1
284,426 - GFF1098 0.44 -0.1
284,695 - GFF1098 0.82 -0.3
284,851 + -0.2
285,047 - -0.2
285,266 + -0.8
285,354 - GFF1099 0.19 -0.7
285,623 + GFF1099 0.68 -0.4
285,624 - GFF1099 0.68 -0.9
285,887 - +0.3
285,890 - -0.1
286,166 - GFF1100 0.39 +0.5
286,177 + GFF1100 0.41 +0.1
286,306 + GFF1100 0.60 +0.5
286,312 - GFF1100 0.61 -0.3
286,419 - GFF1100 0.76 +0.3
286,439 + GFF1100 0.79 -0.9
286,439 + GFF1100 0.79 +0.1
286,469 - GFF1100 0.83 +0.7
286,587 - -0.7
286,699 - -0.1
286,786 - -0.1

Or see this region's nucleotide sequence