Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04255 and ECD_04256 overlap by 29 nucleotides ECD_04256 and ECD_04257 are separated by 257 nucleotides
ECD_04255: ECD_04255 - putative pyruvate formate lyase activating enzyme, at 4,533,055 to 4,533,918
_04255
ECD_04256: ECD_04256 - DUF3029 family protein, putative glycine radical enzyme, at 4,533,890 to 4,535,440
_04256
ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477
_04257
Position (kb)
4533
4534
4535
4536 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4533.017 kb on + strand at 4533.038 kb on - strand at 4533.062 kb on + strand at 4533.076 kb on + strand at 4533.167 kb on + strand, within ECD_04255 at 4533.168 kb on - strand, within ECD_04255 at 4533.323 kb on + strand, within ECD_04255 at 4533.324 kb on - strand, within ECD_04255 at 4533.517 kb on - strand, within ECD_04255 at 4533.517 kb on - strand, within ECD_04255 at 4533.891 kb on + strand at 4533.923 kb on + strand at 4533.950 kb on - strand at 4534.042 kb on + strand at 4534.043 kb on - strand at 4534.043 kb on - strand at 4534.045 kb on - strand, within ECD_04256 at 4534.131 kb on - strand, within ECD_04256 at 4534.197 kb on + strand, within ECD_04256 at 4534.198 kb on - strand, within ECD_04256 at 4534.200 kb on + strand, within ECD_04256 at 4534.200 kb on + strand, within ECD_04256 at 4534.201 kb on - strand, within ECD_04256 at 4534.341 kb on + strand, within ECD_04256 at 4534.398 kb on - strand, within ECD_04256 at 4534.425 kb on + strand, within ECD_04256 at 4534.482 kb on + strand, within ECD_04256 at 4534.482 kb on + strand, within ECD_04256 at 4534.482 kb on + strand, within ECD_04256 at 4534.482 kb on + strand, within ECD_04256 at 4534.483 kb on - strand, within ECD_04256 at 4534.483 kb on - strand, within ECD_04256 at 4534.483 kb on - strand, within ECD_04256 at 4534.483 kb on - strand, within ECD_04256 at 4534.543 kb on + strand, within ECD_04256 at 4534.544 kb on - strand, within ECD_04256 at 4534.625 kb on + strand, within ECD_04256 at 4534.731 kb on + strand, within ECD_04256 at 4534.969 kb on + strand, within ECD_04256 at 4535.015 kb on + strand, within ECD_04256 at 4535.114 kb on + strand, within ECD_04256 at 4535.115 kb on - strand, within ECD_04256 at 4535.215 kb on - strand, within ECD_04256 at 4535.264 kb on - strand, within ECD_04256 at 4535.478 kb on + strand at 4535.479 kb on - strand at 4535.479 kb on - strand at 4535.569 kb on + strand at 4535.570 kb on - strand at 4535.588 kb on - strand at 4535.591 kb on + strand at 4535.613 kb on - strand at 4535.783 kb on + strand, within ECD_04257 at 4535.784 kb on - strand, within ECD_04257 at 4535.833 kb on - strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.843 kb on - strand, within ECD_04257 at 4535.910 kb on + strand, within ECD_04257 at 4536.072 kb on + strand, within ECD_04257 at 4536.098 kb on + strand, within ECD_04257 at 4536.099 kb on - strand, within ECD_04257
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 4,533,017 + -1.1 4,533,038 - -0.2 4,533,062 + -0.9 4,533,076 + -0.3 4,533,167 + ECD_04255 0.13 -1.4 4,533,168 - ECD_04255 0.13 +0.4 4,533,323 + ECD_04255 0.31 -0.5 4,533,324 - ECD_04255 0.31 +0.9 4,533,517 - ECD_04255 0.53 -0.1 4,533,517 - ECD_04255 0.53 +0.2 4,533,891 + -0.4 4,533,923 + +0.8 4,533,950 - -0.0 4,534,042 + +0.5 4,534,043 - +0.2 4,534,043 - +0.6 4,534,045 - ECD_04256 0.10 -1.3 4,534,131 - ECD_04256 0.16 -0.3 4,534,197 + ECD_04256 0.20 +0.4 4,534,198 - ECD_04256 0.20 -0.6 4,534,200 + ECD_04256 0.20 -0.0 4,534,200 + ECD_04256 0.20 -0.5 4,534,201 - ECD_04256 0.20 +0.2 4,534,341 + ECD_04256 0.29 -1.6 4,534,398 - ECD_04256 0.33 -0.8 4,534,425 + ECD_04256 0.34 -0.9 4,534,482 + ECD_04256 0.38 -1.1 4,534,482 + ECD_04256 0.38 -0.7 4,534,482 + ECD_04256 0.38 -0.3 4,534,482 + ECD_04256 0.38 +0.3 4,534,483 - ECD_04256 0.38 -0.1 4,534,483 - ECD_04256 0.38 -0.4 4,534,483 - ECD_04256 0.38 +0.6 4,534,483 - ECD_04256 0.38 +0.0 4,534,543 + ECD_04256 0.42 -1.4 4,534,544 - ECD_04256 0.42 +0.3 4,534,625 + ECD_04256 0.47 +0.1 4,534,731 + ECD_04256 0.54 -1.0 4,534,969 + ECD_04256 0.70 -0.0 4,535,015 + ECD_04256 0.73 +0.4 4,535,114 + ECD_04256 0.79 -1.3 4,535,115 - ECD_04256 0.79 -2.5 4,535,215 - ECD_04256 0.85 -1.3 4,535,264 - ECD_04256 0.89 -1.1 4,535,478 + -0.4 4,535,479 - -0.2 4,535,479 - -0.1 4,535,569 + +0.5 4,535,570 - -0.3 4,535,588 - +0.4 4,535,591 + +0.3 4,535,613 - -1.3 4,535,783 + ECD_04257 0.11 -0.9 4,535,784 - ECD_04257 0.11 -1.2 4,535,833 - ECD_04257 0.17 -1.4 4,535,838 + ECD_04257 0.18 -0.0 4,535,838 + ECD_04257 0.18 -0.6 4,535,838 + ECD_04257 0.18 -0.9 4,535,838 + ECD_04257 0.18 +0.2 4,535,838 + ECD_04257 0.18 -0.2 4,535,839 - ECD_04257 0.18 -3.5 4,535,839 - ECD_04257 0.18 -0.3 4,535,839 - ECD_04257 0.18 -1.1 4,535,843 - ECD_04257 0.19 -1.3 4,535,910 + ECD_04257 0.27 -0.1 4,536,072 + ECD_04257 0.48 +0.0 4,536,098 + ECD_04257 0.51 -0.1 4,536,099 - ECD_04257 0.51 -1.1
Or see this region's nucleotide sequence