Strain Fitness in Escherichia coli BL21 around ECD_04256

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04255 and ECD_04256 overlap by 29 nucleotidesECD_04256 and ECD_04257 are separated by 257 nucleotides ECD_04255: ECD_04255 - putative pyruvate formate lyase activating enzyme, at 4,533,055 to 4,533,918 _04255 ECD_04256: ECD_04256 - DUF3029 family protein, putative glycine radical enzyme, at 4,533,890 to 4,535,440 _04256 ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477 _04257 Position (kb) 4533 4534 4535 4536Strain fitness (log2 ratio) -3 -2 -1 0 1at 4533.017 kb on + strandat 4533.038 kb on - strandat 4533.062 kb on + strandat 4533.076 kb on + strandat 4533.167 kb on + strand, within ECD_04255at 4533.168 kb on - strand, within ECD_04255at 4533.323 kb on + strand, within ECD_04255at 4533.324 kb on - strand, within ECD_04255at 4533.517 kb on - strand, within ECD_04255at 4533.517 kb on - strand, within ECD_04255at 4533.891 kb on + strandat 4533.923 kb on + strandat 4533.950 kb on - strandat 4534.042 kb on + strandat 4534.043 kb on - strandat 4534.043 kb on - strandat 4534.045 kb on - strand, within ECD_04256at 4534.131 kb on - strand, within ECD_04256at 4534.197 kb on + strand, within ECD_04256at 4534.198 kb on - strand, within ECD_04256at 4534.200 kb on + strand, within ECD_04256at 4534.200 kb on + strand, within ECD_04256at 4534.201 kb on - strand, within ECD_04256at 4534.341 kb on + strand, within ECD_04256at 4534.398 kb on - strand, within ECD_04256at 4534.425 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.543 kb on + strand, within ECD_04256at 4534.544 kb on - strand, within ECD_04256at 4534.625 kb on + strand, within ECD_04256at 4534.731 kb on + strand, within ECD_04256at 4534.969 kb on + strand, within ECD_04256at 4535.015 kb on + strand, within ECD_04256at 4535.114 kb on + strand, within ECD_04256at 4535.115 kb on - strand, within ECD_04256at 4535.215 kb on - strand, within ECD_04256at 4535.264 kb on - strand, within ECD_04256at 4535.478 kb on + strandat 4535.479 kb on - strandat 4535.479 kb on - strandat 4535.569 kb on + strandat 4535.570 kb on - strandat 4535.588 kb on - strandat 4535.591 kb on + strandat 4535.613 kb on - strandat 4535.783 kb on + strand, within ECD_04257at 4535.784 kb on - strand, within ECD_04257at 4535.833 kb on - strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.843 kb on - strand, within ECD_04257at 4535.910 kb on + strand, within ECD_04257at 4536.072 kb on + strand, within ECD_04257at 4536.098 kb on + strand, within ECD_04257at 4536.099 kb on - strand, within ECD_04257

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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4,533,017 + -1.1
4,533,038 - -0.2
4,533,062 + -0.9
4,533,076 + -0.3
4,533,167 + ECD_04255 0.13 -1.4
4,533,168 - ECD_04255 0.13 +0.4
4,533,323 + ECD_04255 0.31 -0.5
4,533,324 - ECD_04255 0.31 +0.9
4,533,517 - ECD_04255 0.53 -0.1
4,533,517 - ECD_04255 0.53 +0.2
4,533,891 + -0.4
4,533,923 + +0.8
4,533,950 - -0.0
4,534,042 + +0.5
4,534,043 - +0.2
4,534,043 - +0.6
4,534,045 - ECD_04256 0.10 -1.3
4,534,131 - ECD_04256 0.16 -0.3
4,534,197 + ECD_04256 0.20 +0.4
4,534,198 - ECD_04256 0.20 -0.6
4,534,200 + ECD_04256 0.20 -0.0
4,534,200 + ECD_04256 0.20 -0.5
4,534,201 - ECD_04256 0.20 +0.2
4,534,341 + ECD_04256 0.29 -1.6
4,534,398 - ECD_04256 0.33 -0.8
4,534,425 + ECD_04256 0.34 -0.9
4,534,482 + ECD_04256 0.38 -1.1
4,534,482 + ECD_04256 0.38 -0.7
4,534,482 + ECD_04256 0.38 -0.3
4,534,482 + ECD_04256 0.38 +0.3
4,534,483 - ECD_04256 0.38 -0.1
4,534,483 - ECD_04256 0.38 -0.4
4,534,483 - ECD_04256 0.38 +0.6
4,534,483 - ECD_04256 0.38 +0.0
4,534,543 + ECD_04256 0.42 -1.4
4,534,544 - ECD_04256 0.42 +0.3
4,534,625 + ECD_04256 0.47 +0.1
4,534,731 + ECD_04256 0.54 -1.0
4,534,969 + ECD_04256 0.70 -0.0
4,535,015 + ECD_04256 0.73 +0.4
4,535,114 + ECD_04256 0.79 -1.3
4,535,115 - ECD_04256 0.79 -2.5
4,535,215 - ECD_04256 0.85 -1.3
4,535,264 - ECD_04256 0.89 -1.1
4,535,478 + -0.4
4,535,479 - -0.2
4,535,479 - -0.1
4,535,569 + +0.5
4,535,570 - -0.3
4,535,588 - +0.4
4,535,591 + +0.3
4,535,613 - -1.3
4,535,783 + ECD_04257 0.11 -0.9
4,535,784 - ECD_04257 0.11 -1.2
4,535,833 - ECD_04257 0.17 -1.4
4,535,838 + ECD_04257 0.18 -0.0
4,535,838 + ECD_04257 0.18 -0.6
4,535,838 + ECD_04257 0.18 -0.9
4,535,838 + ECD_04257 0.18 +0.2
4,535,838 + ECD_04257 0.18 -0.2
4,535,839 - ECD_04257 0.18 -3.5
4,535,839 - ECD_04257 0.18 -0.3
4,535,839 - ECD_04257 0.18 -1.1
4,535,843 - ECD_04257 0.19 -1.3
4,535,910 + ECD_04257 0.27 -0.1
4,536,072 + ECD_04257 0.48 +0.0
4,536,098 + ECD_04257 0.51 -0.1
4,536,099 - ECD_04257 0.51 -1.1

Or see this region's nucleotide sequence