Strain Fitness in Escherichia coli BL21 around ECD_04211

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04211 and ECD_04212 overlap by 1 nucleotides ECD_04211: ECD_04211 - 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC, at 4,483,222 to 4,484,268 _04211 ECD_04212: ECD_04212 - 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB, at 4,484,268 to 4,485,647 _04212 Position (kb) 4483 4484 4485Strain fitness (log2 ratio) -2 -1 0 1at 4482.225 kb on + strandat 4482.226 kb on - strandat 4482.294 kb on + strandat 4482.305 kb on - strandat 4482.466 kb on + strandat 4482.502 kb on + strandat 4482.502 kb on + strandat 4482.503 kb on - strandat 4482.674 kb on + strandat 4482.686 kb on + strandat 4482.788 kb on - strandat 4483.004 kb on + strandat 4483.037 kb on + strandat 4483.037 kb on + strandat 4483.224 kb on - strandat 4483.264 kb on + strandat 4483.285 kb on + strandat 4483.351 kb on + strand, within ECD_04211at 4483.362 kb on - strand, within ECD_04211at 4484.251 kb on + strandat 4484.299 kb on - strandat 4484.669 kb on - strand, within ECD_04212at 4484.942 kb on - strand, within ECD_04212

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
remove
4,482,225 + -1.1
4,482,226 - -0.4
4,482,294 + +0.4
4,482,305 - -0.5
4,482,466 + +0.6
4,482,502 + -0.2
4,482,502 + -1.1
4,482,503 - -2.2
4,482,674 + -0.5
4,482,686 + -0.6
4,482,788 - -0.4
4,483,004 + +0.7
4,483,037 + -0.4
4,483,037 + -0.1
4,483,224 - -0.1
4,483,264 + -1.8
4,483,285 + -2.1
4,483,351 + ECD_04211 0.12 -0.8
4,483,362 - ECD_04211 0.13 -1.4
4,484,251 + -0.7
4,484,299 - -1.3
4,484,669 - ECD_04212 0.29 -1.5
4,484,942 - ECD_04212 0.49 -2.7

Or see this region's nucleotide sequence