Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04158 and ECD_04159 overlap by 4 nucleotides ECD_04159 and ECD_04160 are separated by 291 nucleotides
ECD_04158: ECD_04158 - anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator, at 4,430,161 to 4,431,114
_04158
ECD_04159: ECD_04159 - RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor, at 4,431,111 to 4,431,632
_04159
ECD_04160: ECD_04160 - IS1 protein InsA, at 4,431,924 to 4,432,199
_04160
Position (kb) 4431
4432 Strain fitness (log2 ratio) -1
0
1 at 4430.129 kb on - strand at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.996 kb on + strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4431.047 kb on - strand at 4431.057 kb on - strand at 4431.121 kb on + strand at 4431.121 kb on + strand at 4431.217 kb on + strand, within ECD_04159 at 4431.218 kb on - strand, within ECD_04159 at 4431.300 kb on + strand, within ECD_04159 at 4431.301 kb on - strand, within ECD_04159 at 4431.376 kb on + strand, within ECD_04159 at 4431.583 kb on + strand at 4431.614 kb on + strand at 4431.652 kb on - strand at 4431.663 kb on - strand at 4431.669 kb on - strand at 4431.672 kb on - strand at 4431.754 kb on + strand at 4431.759 kb on + strand at 4431.829 kb on + strand at 4431.829 kb on + strand at 4431.830 kb on - strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.899 kb on - strand at 4431.899 kb on - strand at 4431.912 kb on + strand at 4432.012 kb on - strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.166 kb on - strand, within ECD_04160 at 4432.209 kb on + strand at 4432.262 kb on + strand at 4432.263 kb on - strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.433 kb on + strand at 4432.479 kb on - strand at 4432.545 kb on + strand at 4432.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 4,430,129 - -0.6 4,430,397 + ECD_04158 0.25 +0.2 4,430,397 + ECD_04158 0.25 -1.3 4,430,397 + ECD_04158 0.25 -0.6 4,430,644 - ECD_04158 0.51 -0.7 4,430,644 - ECD_04158 0.51 +0.1 4,430,644 - ECD_04158 0.51 -0.5 4,430,644 - ECD_04158 0.51 +0.5 4,430,857 + ECD_04158 0.73 -0.6 4,430,857 + ECD_04158 0.73 -0.2 4,430,996 + ECD_04158 0.88 -0.2 4,430,997 - ECD_04158 0.88 -0.2 4,430,997 - ECD_04158 0.88 -0.1 4,430,997 - ECD_04158 0.88 -0.1 4,431,047 - -0.5 4,431,057 - +0.3 4,431,121 + -0.6 4,431,121 + -0.0 4,431,217 + ECD_04159 0.20 -1.3 4,431,218 - ECD_04159 0.20 +0.1 4,431,300 + ECD_04159 0.36 -0.2 4,431,301 - ECD_04159 0.36 +0.2 4,431,376 + ECD_04159 0.51 +1.2 4,431,583 + -0.6 4,431,614 + -1.2 4,431,652 - -0.3 4,431,663 - -0.2 4,431,669 - -0.2 4,431,672 - -0.5 4,431,754 + -0.1 4,431,759 + -0.1 4,431,829 + -1.1 4,431,829 + -0.5 4,431,830 - -0.5 4,431,898 + +0.1 4,431,898 + +0.1 4,431,898 + +0.1 4,431,898 + -0.1 4,431,899 - -0.3 4,431,899 - -0.9 4,431,912 + -0.7 4,432,012 - ECD_04160 0.32 -0.4 4,432,045 + ECD_04160 0.44 -0.2 4,432,045 + ECD_04160 0.44 +0.4 4,432,045 + ECD_04160 0.44 -0.2 4,432,045 + ECD_04160 0.44 +0.9 4,432,166 - ECD_04160 0.88 +1.4 4,432,209 + +0.0 4,432,262 + -1.3 4,432,263 - -0.4 4,432,409 + -0.1 4,432,409 + -0.7 4,432,409 + +0.3 4,432,409 + +0.9 4,432,410 - -1.3 4,432,410 - -0.6 4,432,410 - -0.8 4,432,433 + -0.2 4,432,479 - -0.6 4,432,545 + -1.2 4,432,619 + -0.7
Or see this region's nucleotide sequence