Strain Fitness in Escherichia coli BL21 around ECD_04145

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04142 and ECD_04145 are separated by 791 nucleotidesECD_04145 and ECD_04146 are separated by 55 nucleotides ECD_04142: ECD_04142 - GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent, at 4,415,544 to 4,416,662 _04142 ECD_04145: ECD_04145 - IS911 protein, at 4,417,454 to 4,417,726 _04145 ECD_04146: ECD_04146 - IS911 orfA-like protein, at 4,417,782 to 4,418,621 _04146 Position (kb) 4417 4418Strain fitness (log2 ratio) -1 0 1at 4416.500 kb on + strand, within ECD_04142at 4416.578 kb on + strandat 4416.985 kb on + strandat 4416.985 kb on + strandat 4417.002 kb on - strandat 4417.038 kb on + strandat 4417.074 kb on + strandat 4417.090 kb on - strandat 4417.168 kb on + strandat 4417.172 kb on - strandat 4417.172 kb on - strandat 4417.181 kb on + strandat 4417.181 kb on + strandat 4417.182 kb on - strandat 4417.258 kb on + strandat 4417.259 kb on - strandat 4417.296 kb on - strandat 4417.296 kb on - strandat 4417.318 kb on + strandat 4417.326 kb on + strandat 4417.326 kb on + strandat 4417.326 kb on + strandat 4417.365 kb on - strandat 4417.520 kb on + strand, within ECD_04145at 4417.520 kb on + strand, within ECD_04145at 4417.653 kb on + strand, within ECD_04145at 4417.654 kb on - strand, within ECD_04145at 4417.658 kb on - strand, within ECD_04145at 4417.776 kb on + strandat 4418.282 kb on + strand, within ECD_04146at 4418.327 kb on + strand, within ECD_04146at 4418.351 kb on - strand, within ECD_04146at 4418.378 kb on + strand, within ECD_04146at 4418.379 kb on - strand, within ECD_04146at 4418.467 kb on - strand, within ECD_04146at 4418.471 kb on - strand, within ECD_04146at 4418.471 kb on - strand, within ECD_04146at 4418.506 kb on - strand, within ECD_04146at 4418.506 kb on - strand, within ECD_04146at 4418.659 kb on - strandat 4418.689 kb on - strandat 4418.696 kb on + strandat 4418.697 kb on - strandat 4418.714 kb on + strandat 4418.714 kb on + strandat 4418.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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4,416,500 + ECD_04142 0.85 -0.2
4,416,578 + -0.6
4,416,985 + +0.9
4,416,985 + -1.1
4,417,002 - -0.4
4,417,038 + -0.9
4,417,074 + -0.1
4,417,090 - -0.3
4,417,168 + -0.4
4,417,172 - -0.1
4,417,172 - +0.3
4,417,181 + +0.2
4,417,181 + -0.8
4,417,182 - -0.1
4,417,258 + +0.0
4,417,259 - +0.4
4,417,296 - -0.5
4,417,296 - -0.4
4,417,318 + +0.2
4,417,326 + -0.4
4,417,326 + -0.6
4,417,326 + -0.0
4,417,365 - -0.1
4,417,520 + ECD_04145 0.24 +0.3
4,417,520 + ECD_04145 0.24 +0.4
4,417,653 + ECD_04145 0.73 +0.4
4,417,654 - ECD_04145 0.73 -0.7
4,417,658 - ECD_04145 0.75 +0.0
4,417,776 + +1.0
4,418,282 + ECD_04146 0.60 -0.5
4,418,327 + ECD_04146 0.65 +0.1
4,418,351 - ECD_04146 0.68 -0.1
4,418,378 + ECD_04146 0.71 +0.2
4,418,379 - ECD_04146 0.71 -0.1
4,418,467 - ECD_04146 0.82 -0.7
4,418,471 - ECD_04146 0.82 -0.2
4,418,471 - ECD_04146 0.82 -1.2
4,418,506 - ECD_04146 0.86 -0.1
4,418,506 - ECD_04146 0.86 -1.5
4,418,659 - -0.6
4,418,689 - -1.3
4,418,696 + +0.1
4,418,697 - -1.1
4,418,714 + -0.4
4,418,714 + -0.7
4,418,715 - -0.1

Or see this region's nucleotide sequence