Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04142 and ECD_04145 are separated by 791 nucleotides ECD_04145 and ECD_04146 are separated by 55 nucleotides
ECD_04142: ECD_04142 - GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent, at 4,415,544 to 4,416,662
_04142
ECD_04145: ECD_04145 - IS911 protein, at 4,417,454 to 4,417,726
_04145
ECD_04146: ECD_04146 - IS911 orfA-like protein, at 4,417,782 to 4,418,621
_04146
Position (kb)
4417
4418 Strain fitness (log2 ratio)
-1
0
1 at 4416.500 kb on + strand, within ECD_04142 at 4416.578 kb on + strand at 4416.985 kb on + strand at 4416.985 kb on + strand at 4417.002 kb on - strand at 4417.038 kb on + strand at 4417.074 kb on + strand at 4417.090 kb on - strand at 4417.168 kb on + strand at 4417.172 kb on - strand at 4417.172 kb on - strand at 4417.181 kb on + strand at 4417.181 kb on + strand at 4417.182 kb on - strand at 4417.258 kb on + strand at 4417.259 kb on - strand at 4417.296 kb on - strand at 4417.296 kb on - strand at 4417.318 kb on + strand at 4417.326 kb on + strand at 4417.326 kb on + strand at 4417.326 kb on + strand at 4417.365 kb on - strand at 4417.520 kb on + strand, within ECD_04145 at 4417.520 kb on + strand, within ECD_04145 at 4417.653 kb on + strand, within ECD_04145 at 4417.654 kb on - strand, within ECD_04145 at 4417.658 kb on - strand, within ECD_04145 at 4417.776 kb on + strand at 4418.282 kb on + strand, within ECD_04146 at 4418.327 kb on + strand, within ECD_04146 at 4418.351 kb on - strand, within ECD_04146 at 4418.378 kb on + strand, within ECD_04146 at 4418.379 kb on - strand, within ECD_04146 at 4418.467 kb on - strand, within ECD_04146 at 4418.471 kb on - strand, within ECD_04146 at 4418.471 kb on - strand, within ECD_04146 at 4418.506 kb on - strand, within ECD_04146 at 4418.506 kb on - strand, within ECD_04146 at 4418.659 kb on - strand at 4418.689 kb on - strand at 4418.696 kb on + strand at 4418.697 kb on - strand at 4418.714 kb on + strand at 4418.714 kb on + strand at 4418.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 4,416,500 + ECD_04142 0.85 -0.2 4,416,578 + -0.6 4,416,985 + +0.9 4,416,985 + -1.1 4,417,002 - -0.4 4,417,038 + -0.9 4,417,074 + -0.1 4,417,090 - -0.3 4,417,168 + -0.4 4,417,172 - -0.1 4,417,172 - +0.3 4,417,181 + +0.2 4,417,181 + -0.8 4,417,182 - -0.1 4,417,258 + +0.0 4,417,259 - +0.4 4,417,296 - -0.5 4,417,296 - -0.4 4,417,318 + +0.2 4,417,326 + -0.4 4,417,326 + -0.6 4,417,326 + -0.0 4,417,365 - -0.1 4,417,520 + ECD_04145 0.24 +0.3 4,417,520 + ECD_04145 0.24 +0.4 4,417,653 + ECD_04145 0.73 +0.4 4,417,654 - ECD_04145 0.73 -0.7 4,417,658 - ECD_04145 0.75 +0.0 4,417,776 + +1.0 4,418,282 + ECD_04146 0.60 -0.5 4,418,327 + ECD_04146 0.65 +0.1 4,418,351 - ECD_04146 0.68 -0.1 4,418,378 + ECD_04146 0.71 +0.2 4,418,379 - ECD_04146 0.71 -0.1 4,418,467 - ECD_04146 0.82 -0.7 4,418,471 - ECD_04146 0.82 -0.2 4,418,471 - ECD_04146 0.82 -1.2 4,418,506 - ECD_04146 0.86 -0.1 4,418,506 - ECD_04146 0.86 -1.5 4,418,659 - -0.6 4,418,689 - -1.3 4,418,696 + +0.1 4,418,697 - -1.1 4,418,714 + -0.4 4,418,714 + -0.7 4,418,715 - -0.1
Or see this region's nucleotide sequence