Strain Fitness in Escherichia coli BL21 around ECD_04126

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04124 and ECD_04125 overlap by 1 nucleotidesECD_04125 and ECD_04126 are separated by 353 nucleotidesECD_04126 and ECD_04127 are separated by 266 nucleotides ECD_04124: ECD_04124 - valyl-tRNA synthetase, at 4,392,380 to 4,395,235 _04124 ECD_04125: ECD_04125 - DNA polymerase III, chi subunit, at 4,395,235 to 4,395,678 _04125 ECD_04126: ECD_04126 - multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site-specific recombination factor, at 4,396,032 to 4,397,543 _04126 ECD_04127: ECD_04127 - lipopolysaccharide export ABC permease, at 4,397,810 to 4,398,910 _04127 Position (kb) 4396 4397 4398Strain fitness (log2 ratio) -2 -1 0 1at 4395.253 kb on - strandat 4395.679 kb on - strandat 4395.679 kb on - strandat 4395.679 kb on - strandat 4395.679 kb on - strandat 4395.681 kb on - strandat 4395.681 kb on - strandat 4395.681 kb on - strandat 4395.681 kb on - strandat 4395.708 kb on - strandat 4395.708 kb on - strandat 4395.720 kb on + strandat 4395.720 kb on + strandat 4395.721 kb on - strandat 4395.784 kb on + strandat 4395.784 kb on + strandat 4395.785 kb on - strandat 4395.785 kb on - strandat 4395.785 kb on - strandat 4395.819 kb on + strandat 4395.820 kb on - strandat 4395.854 kb on - strandat 4395.880 kb on + strandat 4395.916 kb on - strandat 4395.916 kb on - strandat 4395.916 kb on - strandat 4395.977 kb on - strandat 4396.034 kb on - strandat 4396.063 kb on - strandat 4396.163 kb on - strandat 4396.166 kb on + strandat 4396.167 kb on - strandat 4396.167 kb on - strandat 4396.450 kb on + strand, within ECD_04126at 4396.451 kb on - strand, within ECD_04126at 4396.451 kb on - strand, within ECD_04126at 4396.451 kb on - strand, within ECD_04126at 4396.451 kb on - strand, within ECD_04126at 4396.455 kb on + strand, within ECD_04126at 4396.615 kb on - strand, within ECD_04126at 4396.615 kb on - strand, within ECD_04126at 4396.615 kb on - strand, within ECD_04126at 4396.664 kb on + strand, within ECD_04126at 4396.665 kb on - strand, within ECD_04126at 4396.665 kb on - strand, within ECD_04126at 4396.665 kb on - strand, within ECD_04126at 4396.665 kb on - strand, within ECD_04126at 4396.670 kb on - strand, within ECD_04126at 4396.670 kb on - strand, within ECD_04126at 4396.890 kb on - strand, within ECD_04126at 4396.903 kb on + strand, within ECD_04126at 4396.903 kb on + strand, within ECD_04126at 4396.904 kb on - strand, within ECD_04126at 4397.132 kb on - strand, within ECD_04126at 4397.177 kb on - strand, within ECD_04126at 4397.181 kb on - strand, within ECD_04126at 4397.181 kb on - strand, within ECD_04126at 4397.250 kb on - strand, within ECD_04126at 4397.403 kb on + strandat 4397.404 kb on - strandat 4397.404 kb on - strandat 4397.404 kb on - strandat 4397.420 kb on - strandat 4397.420 kb on - strandat 4397.535 kb on - strandat 4397.549 kb on - strandat 4397.549 kb on - strandat 4397.549 kb on - strandat 4397.564 kb on - strandat 4397.589 kb on - strandat 4397.589 kb on - strandat 4397.645 kb on + strandat 4397.645 kb on + strandat 4397.651 kb on + strandat 4397.702 kb on + strandat 4397.703 kb on - strandat 4397.703 kb on - strandat 4397.704 kb on + strandat 4397.705 kb on - strandat 4397.705 kb on - strandat 4397.705 kb on - strandat 4397.705 kb on - strandat 4397.705 kb on - strandat 4397.705 kb on - strandat 4397.709 kb on - strandat 4397.741 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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4,395,253 - +0.5
4,395,679 - -0.0
4,395,679 - -1.7
4,395,679 - +0.6
4,395,679 - +0.1
4,395,681 - +1.1
4,395,681 - +0.5
4,395,681 - +0.0
4,395,681 - -0.6
4,395,708 - -1.2
4,395,708 - -0.4
4,395,720 + -0.8
4,395,720 + -0.6
4,395,721 - +0.6
4,395,784 + -1.2
4,395,784 + -2.0
4,395,785 - +0.5
4,395,785 - -0.7
4,395,785 - +0.5
4,395,819 + -0.2
4,395,820 - -0.1
4,395,854 - +0.5
4,395,880 + -0.2
4,395,916 - +0.4
4,395,916 - +0.4
4,395,916 - +1.1
4,395,977 - +0.8
4,396,034 - +0.0
4,396,063 - +0.6
4,396,163 - -0.3
4,396,166 + -2.2
4,396,167 - -1.3
4,396,167 - +0.1
4,396,450 + ECD_04126 0.28 -2.3
4,396,451 - ECD_04126 0.28 +0.1
4,396,451 - ECD_04126 0.28 +0.2
4,396,451 - ECD_04126 0.28 +0.4
4,396,451 - ECD_04126 0.28 -0.3
4,396,455 + ECD_04126 0.28 -1.6
4,396,615 - ECD_04126 0.39 +0.2
4,396,615 - ECD_04126 0.39 +0.3
4,396,615 - ECD_04126 0.39 +0.2
4,396,664 + ECD_04126 0.42 -0.3
4,396,665 - ECD_04126 0.42 +0.5
4,396,665 - ECD_04126 0.42 +0.1
4,396,665 - ECD_04126 0.42 +0.3
4,396,665 - ECD_04126 0.42 +1.3
4,396,670 - ECD_04126 0.42 +0.7
4,396,670 - ECD_04126 0.42 +0.3
4,396,890 - ECD_04126 0.57 +0.8
4,396,903 + ECD_04126 0.58 -2.4
4,396,903 + ECD_04126 0.58 -0.2
4,396,904 - ECD_04126 0.58 -0.6
4,397,132 - ECD_04126 0.73 +1.0
4,397,177 - ECD_04126 0.76 +0.2
4,397,181 - ECD_04126 0.76 +1.0
4,397,181 - ECD_04126 0.76 +1.0
4,397,250 - ECD_04126 0.81 +0.1
4,397,403 + -1.6
4,397,404 - -0.6
4,397,404 - +0.3
4,397,404 - -0.6
4,397,420 - -0.2
4,397,420 - +0.1
4,397,535 - -0.2
4,397,549 - +0.1
4,397,549 - +0.7
4,397,549 - +0.3
4,397,564 - -0.1
4,397,589 - +0.6
4,397,589 - +0.9
4,397,645 + -0.5
4,397,645 + -0.9
4,397,651 + -0.2
4,397,702 + -0.1
4,397,703 - +0.4
4,397,703 - +0.8
4,397,704 + -0.6
4,397,705 - +0.0
4,397,705 - +0.0
4,397,705 - +0.1
4,397,705 - +0.1
4,397,705 - +0.8
4,397,705 - +0.3
4,397,709 - -0.4
4,397,741 + +0.3

Or see this region's nucleotide sequence