Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00010 and ECD_03130 are separated by 473 nucleotides ECD_03130 and ECD_03131 overlap by 25 nucleotides ECD_03131 and ECD_03132 overlap by 4 nucleotides
ECD_r00010: ECD_r00010 - 16S ribosomal RNA, at 3,288,391 to 3,289,932
_r00010
ECD_03130: ECD_03130 - bacterial transferase hexapeptide domain protein, at 3,290,406 to 3,290,960
_03130
ECD_03131: ECD_03131 - DUF1488 family protein, at 3,290,936 to 3,291,193
_03131
ECD_03132: ECD_03132 - dehydroshikimate reductase, NAD(P)-binding, at 3,291,190 to 3,292,008
_03132
Position (kb)
3290
3291 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3290.231 kb on - strand at 3290.231 kb on - strand at 3290.338 kb on + strand at 3290.339 kb on - strand at 3290.390 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.406 kb on - strand at 3290.419 kb on + strand at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.598 kb on - strand, within ECD_03130 at 3290.616 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.756 kb on - strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.786 kb on + strand, within ECD_03130 at 3290.829 kb on + strand, within ECD_03130 at 3290.830 kb on - strand, within ECD_03130 at 3290.892 kb on + strand, within ECD_03130 at 3290.907 kb on + strand at 3290.908 kb on - strand at 3291.052 kb on + strand, within ECD_03131 at 3291.110 kb on - strand, within ECD_03131 at 3291.110 kb on - strand, within ECD_03131 at 3291.135 kb on - strand, within ECD_03131 at 3291.220 kb on + strand at 3291.221 kb on - strand at 3291.222 kb on + strand at 3291.232 kb on + strand at 3291.296 kb on - strand, within ECD_03132 at 3291.309 kb on + strand, within ECD_03132 at 3291.565 kb on - strand, within ECD_03132 at 3291.569 kb on - strand, within ECD_03132
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 3,290,231 - +0.5 3,290,231 - +0.1 3,290,338 + -0.0 3,290,339 - -0.4 3,290,390 + +0.3 3,290,405 + -0.1 3,290,405 + +0.2 3,290,405 + +0.3 3,290,405 + +0.3 3,290,406 - -0.1 3,290,419 + -0.1 3,290,551 + ECD_03130 0.26 -0.1 3,290,551 + ECD_03130 0.26 -0.0 3,290,551 + ECD_03130 0.26 -0.1 3,290,551 + ECD_03130 0.26 +0.2 3,290,552 - ECD_03130 0.26 -0.9 3,290,552 - ECD_03130 0.26 +0.0 3,290,552 - ECD_03130 0.26 -2.1 3,290,552 - ECD_03130 0.26 -1.3 3,290,552 - ECD_03130 0.26 -1.5 3,290,556 + ECD_03130 0.27 +0.3 3,290,556 + ECD_03130 0.27 +0.4 3,290,556 + ECD_03130 0.27 +1.0 3,290,556 + ECD_03130 0.27 +0.7 3,290,556 + ECD_03130 0.27 -0.3 3,290,556 + ECD_03130 0.27 +0.6 3,290,557 - ECD_03130 0.27 -1.6 3,290,557 - ECD_03130 0.27 -1.3 3,290,557 - ECD_03130 0.27 -1.7 3,290,557 - ECD_03130 0.27 -1.5 3,290,560 + ECD_03130 0.28 -0.5 3,290,560 + ECD_03130 0.28 -0.3 3,290,597 + ECD_03130 0.34 -0.1 3,290,597 + ECD_03130 0.34 -0.8 3,290,598 - ECD_03130 0.35 -3.3 3,290,616 - ECD_03130 0.38 -0.6 3,290,626 - ECD_03130 0.40 -0.0 3,290,626 - ECD_03130 0.40 -1.1 3,290,756 - ECD_03130 0.63 -0.9 3,290,758 + ECD_03130 0.63 +0.5 3,290,758 + ECD_03130 0.63 +0.4 3,290,759 - ECD_03130 0.64 -0.9 3,290,759 - ECD_03130 0.64 -0.6 3,290,786 + ECD_03130 0.68 +0.6 3,290,829 + ECD_03130 0.76 -0.3 3,290,830 - ECD_03130 0.76 -1.0 3,290,892 + ECD_03130 0.88 -0.5 3,290,907 + -0.6 3,290,908 - -1.3 3,291,052 + ECD_03131 0.45 +0.2 3,291,110 - ECD_03131 0.67 +0.2 3,291,110 - ECD_03131 0.67 -0.7 3,291,135 - ECD_03131 0.77 +0.6 3,291,220 + -2.8 3,291,221 - -0.7 3,291,222 + -1.6 3,291,232 + -0.8 3,291,296 - ECD_03132 0.13 -1.2 3,291,309 + ECD_03132 0.15 -3.3 3,291,565 - ECD_03132 0.46 -1.0 3,291,569 - ECD_03132 0.46 -0.3
Or see this region's nucleotide sequence