Strain Fitness in Escherichia coli BL21 around ECD_02854

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02852 and ECD_02853 are separated by 31 nucleotidesECD_02853 and ECD_02854 overlap by 1 nucleotidesECD_02854 and ECD_02855 are separated by 34 nucleotides ECD_02852: ECD_02852 - hypothetical protein, at 2,992,519 to 2,993,433 _02852 ECD_02853: ECD_02853 - hypothetical protein, at 2,993,465 to 2,993,713 _02853 ECD_02854: ECD_02854 - hypothetical protein, at 2,993,713 to 2,994,885 _02854 ECD_02855: ECD_02855 - hypothetical protein, at 2,994,920 to 2,996,080 _02855 Position (kb) 2993 2994 2995Strain fitness (log2 ratio) -3 -2 -1 0 1at 2992.716 kb on - strand, within ECD_02852at 2992.898 kb on - strand, within ECD_02852at 2992.969 kb on + strand, within ECD_02852at 2992.969 kb on + strand, within ECD_02852at 2993.050 kb on - strand, within ECD_02852at 2993.118 kb on + strand, within ECD_02852at 2993.119 kb on - strand, within ECD_02852at 2993.120 kb on + strand, within ECD_02852at 2993.121 kb on - strand, within ECD_02852at 2993.134 kb on + strand, within ECD_02852at 2993.164 kb on + strand, within ECD_02852at 2993.302 kb on - strand, within ECD_02852at 2993.356 kb on - strandat 2993.377 kb on - strandat 2993.456 kb on - strandat 2993.469 kb on + strandat 2993.481 kb on + strandat 2993.601 kb on + strand, within ECD_02853at 2993.602 kb on - strand, within ECD_02853at 2993.627 kb on - strand, within ECD_02853at 2993.638 kb on + strand, within ECD_02853at 2993.720 kb on + strandat 2993.731 kb on + strandat 2993.732 kb on - strandat 2993.797 kb on - strandat 2993.865 kb on + strand, within ECD_02854at 2993.869 kb on + strand, within ECD_02854at 2993.869 kb on + strand, within ECD_02854at 2993.886 kb on + strand, within ECD_02854at 2993.886 kb on + strand, within ECD_02854at 2993.972 kb on - strand, within ECD_02854at 2993.972 kb on - strand, within ECD_02854at 2994.051 kb on + strand, within ECD_02854at 2994.134 kb on - strand, within ECD_02854at 2994.243 kb on + strand, within ECD_02854at 2994.262 kb on + strand, within ECD_02854at 2994.263 kb on - strand, within ECD_02854at 2994.328 kb on + strand, within ECD_02854at 2994.365 kb on + strand, within ECD_02854at 2994.420 kb on + strand, within ECD_02854at 2994.423 kb on + strand, within ECD_02854at 2994.520 kb on - strand, within ECD_02854at 2994.579 kb on + strand, within ECD_02854at 2994.579 kb on + strand, within ECD_02854at 2994.665 kb on + strand, within ECD_02854at 2994.675 kb on + strand, within ECD_02854at 2994.675 kb on + strand, within ECD_02854at 2994.676 kb on - strand, within ECD_02854at 2994.722 kb on + strand, within ECD_02854at 2994.768 kb on + strandat 2994.813 kb on + strandat 2994.936 kb on + strandat 2994.937 kb on - strandat 2994.942 kb on + strandat 2994.942 kb on + strandat 2994.942 kb on + strandat 2994.943 kb on - strandat 2995.016 kb on + strandat 2995.044 kb on + strand, within ECD_02855at 2995.233 kb on + strand, within ECD_02855at 2995.234 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.287 kb on - strand, within ECD_02855at 2995.338 kb on - strand, within ECD_02855at 2995.434 kb on + strand, within ECD_02855at 2995.435 kb on - strand, within ECD_02855at 2995.435 kb on - strand, within ECD_02855at 2995.556 kb on - strand, within ECD_02855at 2995.626 kb on - strand, within ECD_02855

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,992,716 - ECD_02852 0.22 -0.8
2,992,898 - ECD_02852 0.41 +0.2
2,992,969 + ECD_02852 0.49 +0.3
2,992,969 + ECD_02852 0.49 -0.6
2,993,050 - ECD_02852 0.58 -0.1
2,993,118 + ECD_02852 0.65 -0.6
2,993,119 - ECD_02852 0.66 -3.5
2,993,120 + ECD_02852 0.66 -0.2
2,993,121 - ECD_02852 0.66 +0.1
2,993,134 + ECD_02852 0.67 +1.3
2,993,164 + ECD_02852 0.70 -0.8
2,993,302 - ECD_02852 0.86 -0.0
2,993,356 - +0.1
2,993,377 - -1.6
2,993,456 - -0.7
2,993,469 + +0.5
2,993,481 + -0.4
2,993,601 + ECD_02853 0.55 -2.2
2,993,602 - ECD_02853 0.55 -1.3
2,993,627 - ECD_02853 0.65 -3.2
2,993,638 + ECD_02853 0.69 -0.6
2,993,720 + -0.9
2,993,731 + +0.7
2,993,732 - -3.0
2,993,797 - -2.1
2,993,865 + ECD_02854 0.13 -0.1
2,993,869 + ECD_02854 0.13 -1.4
2,993,869 + ECD_02854 0.13 -0.4
2,993,886 + ECD_02854 0.15 -0.5
2,993,886 + ECD_02854 0.15 +0.3
2,993,972 - ECD_02854 0.22 -0.6
2,993,972 - ECD_02854 0.22 -1.1
2,994,051 + ECD_02854 0.29 -0.1
2,994,134 - ECD_02854 0.36 +0.3
2,994,243 + ECD_02854 0.45 +0.1
2,994,262 + ECD_02854 0.47 -0.4
2,994,263 - ECD_02854 0.47 -1.5
2,994,328 + ECD_02854 0.52 -0.1
2,994,365 + ECD_02854 0.56 -0.1
2,994,420 + ECD_02854 0.60 +0.4
2,994,423 + ECD_02854 0.61 -1.3
2,994,520 - ECD_02854 0.69 -1.6
2,994,579 + ECD_02854 0.74 -0.0
2,994,579 + ECD_02854 0.74 +0.2
2,994,665 + ECD_02854 0.81 +0.0
2,994,675 + ECD_02854 0.82 -0.7
2,994,675 + ECD_02854 0.82 -0.4
2,994,676 - ECD_02854 0.82 -0.9
2,994,722 + ECD_02854 0.86 -0.3
2,994,768 + +0.0
2,994,813 + -0.0
2,994,936 + -0.1
2,994,937 - -0.4
2,994,942 + -0.4
2,994,942 + -0.1
2,994,942 + -0.7
2,994,943 - -0.1
2,995,016 + -0.3
2,995,044 + ECD_02855 0.11 -1.1
2,995,233 + ECD_02855 0.27 -1.0
2,995,234 - ECD_02855 0.27 -0.5
2,995,243 - ECD_02855 0.28 -0.4
2,995,243 - ECD_02855 0.28 +0.2
2,995,243 - ECD_02855 0.28 -0.5
2,995,243 - ECD_02855 0.28 -0.5
2,995,243 - ECD_02855 0.28 -0.6
2,995,243 - ECD_02855 0.28 -0.1
2,995,243 - ECD_02855 0.28 +0.1
2,995,287 - ECD_02855 0.32 +0.1
2,995,338 - ECD_02855 0.36 -0.7
2,995,434 + ECD_02855 0.44 -0.8
2,995,435 - ECD_02855 0.44 -0.5
2,995,435 - ECD_02855 0.44 +0.4
2,995,556 - ECD_02855 0.55 -0.7
2,995,626 - ECD_02855 0.61 -0.7

Or see this region's nucleotide sequence