Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02852 and ECD_02853 are separated by 31 nucleotides ECD_02853 and ECD_02854 overlap by 1 nucleotides ECD_02854 and ECD_02855 are separated by 34 nucleotides
ECD_02852: ECD_02852 - hypothetical protein, at 2,992,519 to 2,993,433
_02852
ECD_02853: ECD_02853 - hypothetical protein, at 2,993,465 to 2,993,713
_02853
ECD_02854: ECD_02854 - hypothetical protein, at 2,993,713 to 2,994,885
_02854
ECD_02855: ECD_02855 - hypothetical protein, at 2,994,920 to 2,996,080
_02855
Position (kb)
2993
2994
2995 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2992.716 kb on - strand, within ECD_02852 at 2992.898 kb on - strand, within ECD_02852 at 2992.969 kb on + strand, within ECD_02852 at 2992.969 kb on + strand, within ECD_02852 at 2993.050 kb on - strand, within ECD_02852 at 2993.118 kb on + strand, within ECD_02852 at 2993.119 kb on - strand, within ECD_02852 at 2993.120 kb on + strand, within ECD_02852 at 2993.121 kb on - strand, within ECD_02852 at 2993.134 kb on + strand, within ECD_02852 at 2993.164 kb on + strand, within ECD_02852 at 2993.302 kb on - strand, within ECD_02852 at 2993.356 kb on - strand at 2993.377 kb on - strand at 2993.456 kb on - strand at 2993.469 kb on + strand at 2993.481 kb on + strand at 2993.601 kb on + strand, within ECD_02853 at 2993.602 kb on - strand, within ECD_02853 at 2993.627 kb on - strand, within ECD_02853 at 2993.638 kb on + strand, within ECD_02853 at 2993.720 kb on + strand at 2993.731 kb on + strand at 2993.732 kb on - strand at 2993.797 kb on - strand at 2993.865 kb on + strand, within ECD_02854 at 2993.869 kb on + strand, within ECD_02854 at 2993.869 kb on + strand, within ECD_02854 at 2993.886 kb on + strand, within ECD_02854 at 2993.886 kb on + strand, within ECD_02854 at 2993.972 kb on - strand, within ECD_02854 at 2993.972 kb on - strand, within ECD_02854 at 2994.051 kb on + strand, within ECD_02854 at 2994.134 kb on - strand, within ECD_02854 at 2994.243 kb on + strand, within ECD_02854 at 2994.262 kb on + strand, within ECD_02854 at 2994.263 kb on - strand, within ECD_02854 at 2994.328 kb on + strand, within ECD_02854 at 2994.365 kb on + strand, within ECD_02854 at 2994.420 kb on + strand, within ECD_02854 at 2994.423 kb on + strand, within ECD_02854 at 2994.520 kb on - strand, within ECD_02854 at 2994.579 kb on + strand, within ECD_02854 at 2994.579 kb on + strand, within ECD_02854 at 2994.665 kb on + strand, within ECD_02854 at 2994.675 kb on + strand, within ECD_02854 at 2994.675 kb on + strand, within ECD_02854 at 2994.676 kb on - strand, within ECD_02854 at 2994.722 kb on + strand, within ECD_02854 at 2994.768 kb on + strand at 2994.813 kb on + strand at 2994.936 kb on + strand at 2994.937 kb on - strand at 2994.942 kb on + strand at 2994.942 kb on + strand at 2994.942 kb on + strand at 2994.943 kb on - strand at 2995.016 kb on + strand at 2995.044 kb on + strand, within ECD_02855 at 2995.233 kb on + strand, within ECD_02855 at 2995.234 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.243 kb on - strand, within ECD_02855 at 2995.287 kb on - strand, within ECD_02855 at 2995.338 kb on - strand, within ECD_02855 at 2995.434 kb on + strand, within ECD_02855 at 2995.435 kb on - strand, within ECD_02855 at 2995.435 kb on - strand, within ECD_02855 at 2995.556 kb on - strand, within ECD_02855 at 2995.626 kb on - strand, within ECD_02855
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,992,716 - ECD_02852 0.22 -0.8 2,992,898 - ECD_02852 0.41 +0.2 2,992,969 + ECD_02852 0.49 +0.3 2,992,969 + ECD_02852 0.49 -0.6 2,993,050 - ECD_02852 0.58 -0.1 2,993,118 + ECD_02852 0.65 -0.6 2,993,119 - ECD_02852 0.66 -3.5 2,993,120 + ECD_02852 0.66 -0.2 2,993,121 - ECD_02852 0.66 +0.1 2,993,134 + ECD_02852 0.67 +1.3 2,993,164 + ECD_02852 0.70 -0.8 2,993,302 - ECD_02852 0.86 -0.0 2,993,356 - +0.1 2,993,377 - -1.6 2,993,456 - -0.7 2,993,469 + +0.5 2,993,481 + -0.4 2,993,601 + ECD_02853 0.55 -2.2 2,993,602 - ECD_02853 0.55 -1.3 2,993,627 - ECD_02853 0.65 -3.2 2,993,638 + ECD_02853 0.69 -0.6 2,993,720 + -0.9 2,993,731 + +0.7 2,993,732 - -3.0 2,993,797 - -2.1 2,993,865 + ECD_02854 0.13 -0.1 2,993,869 + ECD_02854 0.13 -1.4 2,993,869 + ECD_02854 0.13 -0.4 2,993,886 + ECD_02854 0.15 -0.5 2,993,886 + ECD_02854 0.15 +0.3 2,993,972 - ECD_02854 0.22 -0.6 2,993,972 - ECD_02854 0.22 -1.1 2,994,051 + ECD_02854 0.29 -0.1 2,994,134 - ECD_02854 0.36 +0.3 2,994,243 + ECD_02854 0.45 +0.1 2,994,262 + ECD_02854 0.47 -0.4 2,994,263 - ECD_02854 0.47 -1.5 2,994,328 + ECD_02854 0.52 -0.1 2,994,365 + ECD_02854 0.56 -0.1 2,994,420 + ECD_02854 0.60 +0.4 2,994,423 + ECD_02854 0.61 -1.3 2,994,520 - ECD_02854 0.69 -1.6 2,994,579 + ECD_02854 0.74 -0.0 2,994,579 + ECD_02854 0.74 +0.2 2,994,665 + ECD_02854 0.81 +0.0 2,994,675 + ECD_02854 0.82 -0.7 2,994,675 + ECD_02854 0.82 -0.4 2,994,676 - ECD_02854 0.82 -0.9 2,994,722 + ECD_02854 0.86 -0.3 2,994,768 + +0.0 2,994,813 + -0.0 2,994,936 + -0.1 2,994,937 - -0.4 2,994,942 + -0.4 2,994,942 + -0.1 2,994,942 + -0.7 2,994,943 - -0.1 2,995,016 + -0.3 2,995,044 + ECD_02855 0.11 -1.1 2,995,233 + ECD_02855 0.27 -1.0 2,995,234 - ECD_02855 0.27 -0.5 2,995,243 - ECD_02855 0.28 -0.4 2,995,243 - ECD_02855 0.28 +0.2 2,995,243 - ECD_02855 0.28 -0.5 2,995,243 - ECD_02855 0.28 -0.5 2,995,243 - ECD_02855 0.28 -0.6 2,995,243 - ECD_02855 0.28 -0.1 2,995,243 - ECD_02855 0.28 +0.1 2,995,287 - ECD_02855 0.32 +0.1 2,995,338 - ECD_02855 0.36 -0.7 2,995,434 + ECD_02855 0.44 -0.8 2,995,435 - ECD_02855 0.44 -0.5 2,995,435 - ECD_02855 0.44 +0.4 2,995,556 - ECD_02855 0.55 -0.7 2,995,626 - ECD_02855 0.61 -0.7
Or see this region's nucleotide sequence