Strain Fitness in Escherichia coli BL21 around ECD_02479

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02478 and ECD_02479 are separated by 113 nucleotidesECD_02479 and ECD_02480 are separated by 96 nucleotidesECD_02480 and ECD_02481 overlap by 4 nucleotides ECD_02478: ECD_02478 - protein lysine acetyltransferase, at 2,586,553 to 2,589,213 _02478 ECD_02479: ECD_02479 - phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase, at 2,589,327 to 2,590,682 _02479 ECD_02480: ECD_02480 - putative lipoprotein, at 2,590,779 to 2,591,051 _02480 ECD_02481: ECD_02481 - alpha-ketoglutarate transporter, at 2,591,048 to 2,592,346 _02481 Position (kb) 2589 2590 2591Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2588.809 kb on + strand, within ECD_02478at 2588.838 kb on + strand, within ECD_02478at 2588.910 kb on + strand, within ECD_02478at 2588.910 kb on + strand, within ECD_02478at 2589.020 kb on + strandat 2589.020 kb on + strandat 2589.052 kb on + strandat 2589.072 kb on - strandat 2589.090 kb on + strandat 2590.860 kb on + strand, within ECD_02480at 2591.195 kb on + strand, within ECD_02481at 2591.198 kb on - strand, within ECD_02481at 2591.215 kb on - strand, within ECD_02481at 2591.465 kb on - strand, within ECD_02481at 2591.551 kb on + strand, within ECD_02481at 2591.552 kb on - strand, within ECD_02481

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,588,809 + ECD_02478 0.85 +0.8
2,588,838 + ECD_02478 0.86 +1.4
2,588,910 + ECD_02478 0.89 +2.6
2,588,910 + ECD_02478 0.89 +2.8
2,589,020 + +1.7
2,589,020 + +2.2
2,589,052 + +1.6
2,589,072 - -0.6
2,589,090 + +2.4
2,590,860 + ECD_02480 0.30 -0.4
2,591,195 + ECD_02481 0.11 -2.8
2,591,198 - ECD_02481 0.12 +0.2
2,591,215 - ECD_02481 0.13 -2.4
2,591,465 - ECD_02481 0.32 -2.1
2,591,551 + ECD_02481 0.39 -0.5
2,591,552 - ECD_02481 0.39 +0.7

Or see this region's nucleotide sequence