Strain Fitness in Escherichia coli BL21 around ECD_02399

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02397 and ECD_02398 are separated by 15 nucleotidesECD_02398 and ECD_02399 are separated by 92 nucleotidesECD_02399 and ECD_02400 are separated by 68 nucleotides ECD_02397: ECD_02397 - outer membrane integrity lipoprotein, at 2,494,272 to 2,494,790 _02397 ECD_02398: ECD_02398 - nalidixic acid resistance protein, putative periplasmic protein, at 2,494,806 to 2,495,345 _02398 ECD_02399: ECD_02399 - GMP synthetase (glutamine aminotransferase), at 2,495,438 to 2,497,015 _02399 ECD_02400: ECD_02400 - IMP dehydrogenase, at 2,497,084 to 2,498,550 _02400 Position (kb) 2495 2496 2497 2498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2494.608 kb on - strand, within ECD_02397at 2494.671 kb on + strand, within ECD_02397at 2494.740 kb on + strandat 2494.791 kb on + strandat 2495.042 kb on + strand, within ECD_02398at 2495.043 kb on - strand, within ECD_02398at 2495.624 kb on - strand, within ECD_02399at 2495.758 kb on - strand, within ECD_02399at 2496.063 kb on - strand, within ECD_02399at 2496.167 kb on - strand, within ECD_02399at 2496.332 kb on - strand, within ECD_02399at 2496.490 kb on - strand, within ECD_02399at 2496.490 kb on - strand, within ECD_02399at 2496.669 kb on - strand, within ECD_02399at 2496.796 kb on - strand, within ECD_02399at 2496.830 kb on - strand, within ECD_02399at 2497.050 kb on - strandat 2497.120 kb on - strandat 2497.207 kb on - strandat 2497.207 kb on - strandat 2497.228 kb on - strandat 2497.472 kb on - strand, within ECD_02400at 2497.597 kb on - strand, within ECD_02400at 2497.636 kb on - strand, within ECD_02400at 2497.642 kb on - strand, within ECD_02400at 2497.753 kb on - strand, within ECD_02400at 2497.753 kb on - strand, within ECD_02400at 2497.781 kb on - strand, within ECD_02400

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,494,608 - ECD_02397 0.65 -2.0
2,494,671 + ECD_02397 0.77 -2.0
2,494,740 + -0.5
2,494,791 + -1.4
2,495,042 + ECD_02398 0.44 -3.6
2,495,043 - ECD_02398 0.44 -1.1
2,495,624 - ECD_02399 0.12 -1.7
2,495,758 - ECD_02399 0.20 +0.5
2,496,063 - ECD_02399 0.40 +0.5
2,496,167 - ECD_02399 0.46 -0.1
2,496,332 - ECD_02399 0.57 -1.3
2,496,490 - ECD_02399 0.67 -0.1
2,496,490 - ECD_02399 0.67 +0.5
2,496,669 - ECD_02399 0.78 -1.5
2,496,796 - ECD_02399 0.86 -0.8
2,496,830 - ECD_02399 0.88 -2.1
2,497,050 - -4.2
2,497,120 - -0.1
2,497,207 - -1.8
2,497,207 - -2.4
2,497,228 - -1.6
2,497,472 - ECD_02400 0.26 -1.5
2,497,597 - ECD_02400 0.35 +0.5
2,497,636 - ECD_02400 0.38 -0.5
2,497,642 - ECD_02400 0.38 -2.5
2,497,753 - ECD_02400 0.46 -1.1
2,497,753 - ECD_02400 0.46 -0.8
2,497,781 - ECD_02400 0.48 -1.3

Or see this region's nucleotide sequence