Strain Fitness in Escherichia coli BL21 around ECD_02384

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02383 and ECD_02384 are separated by 21 nucleotidesECD_02384 and ECD_02385 are separated by 37 nucleotides ECD_02383: ECD_02383 - hydrogenase-4 transcriptional activator, at 2,476,381 to 2,478,393 _02383 ECD_02384: ECD_02384 - putative formate transporter, at 2,478,415 to 2,479,263 _02384 ECD_02385: ECD_02385 - putative UPF0118 family inner membrane permease, at 2,479,301 to 2,480,362 _02385 Position (kb) 2478 2479 2480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2477.421 kb on + strand, within ECD_02383at 2477.421 kb on + strand, within ECD_02383at 2477.422 kb on - strand, within ECD_02383at 2477.422 kb on - strand, within ECD_02383at 2477.425 kb on + strand, within ECD_02383at 2477.425 kb on + strand, within ECD_02383at 2477.450 kb on + strand, within ECD_02383at 2477.462 kb on + strand, within ECD_02383at 2477.462 kb on + strand, within ECD_02383at 2477.466 kb on + strand, within ECD_02383at 2477.487 kb on + strand, within ECD_02383at 2477.488 kb on - strand, within ECD_02383at 2477.553 kb on + strand, within ECD_02383at 2477.766 kb on - strand, within ECD_02383at 2478.269 kb on + strandat 2478.392 kb on - strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.410 kb on + strandat 2478.411 kb on - strandat 2478.411 kb on - strandat 2478.411 kb on - strandat 2478.726 kb on + strand, within ECD_02384at 2478.726 kb on + strand, within ECD_02384at 2479.161 kb on + strand, within ECD_02384at 2479.225 kb on - strandat 2479.243 kb on + strandat 2479.243 kb on + strandat 2479.244 kb on - strandat 2479.244 kb on - strandat 2479.244 kb on - strandat 2479.247 kb on + strandat 2479.247 kb on + strandat 2479.313 kb on + strandat 2479.427 kb on - strand, within ECD_02385at 2479.475 kb on + strand, within ECD_02385at 2479.603 kb on - strand, within ECD_02385at 2479.870 kb on - strand, within ECD_02385at 2479.975 kb on + strand, within ECD_02385at 2480.067 kb on - strand, within ECD_02385at 2480.070 kb on + strand, within ECD_02385at 2480.071 kb on - strand, within ECD_02385at 2480.071 kb on - strand, within ECD_02385at 2480.123 kb on + strand, within ECD_02385at 2480.123 kb on + strand, within ECD_02385at 2480.123 kb on + strand, within ECD_02385at 2480.124 kb on - strand, within ECD_02385at 2480.124 kb on - strand, within ECD_02385at 2480.124 kb on - strand, within ECD_02385at 2480.125 kb on + strand, within ECD_02385at 2480.126 kb on - strand, within ECD_02385at 2480.126 kb on - strand, within ECD_02385at 2480.144 kb on + strand, within ECD_02385at 2480.179 kb on + strand, within ECD_02385

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,477,421 + ECD_02383 0.52 -1.8
2,477,421 + ECD_02383 0.52 -1.6
2,477,422 - ECD_02383 0.52 -0.1
2,477,422 - ECD_02383 0.52 -0.2
2,477,425 + ECD_02383 0.52 -1.1
2,477,425 + ECD_02383 0.52 -0.9
2,477,450 + ECD_02383 0.53 -1.4
2,477,462 + ECD_02383 0.54 -1.8
2,477,462 + ECD_02383 0.54 -0.4
2,477,466 + ECD_02383 0.54 -0.9
2,477,487 + ECD_02383 0.55 +2.0
2,477,488 - ECD_02383 0.55 -2.6
2,477,553 + ECD_02383 0.58 -1.4
2,477,766 - ECD_02383 0.69 -1.9
2,478,269 + -0.9
2,478,392 - -2.8
2,478,410 + +2.1
2,478,410 + -1.3
2,478,410 + -0.2
2,478,410 + +1.7
2,478,410 + -0.8
2,478,411 - +1.6
2,478,411 - +1.0
2,478,411 - -1.5
2,478,726 + ECD_02384 0.37 -0.3
2,478,726 + ECD_02384 0.37 -2.6
2,479,161 + ECD_02384 0.88 -0.1
2,479,225 - +0.4
2,479,243 + -2.3
2,479,243 + -2.1
2,479,244 - -2.5
2,479,244 - -1.2
2,479,244 - -2.0
2,479,247 + -0.6
2,479,247 + -0.6
2,479,313 + -1.1
2,479,427 - ECD_02385 0.12 +1.8
2,479,475 + ECD_02385 0.16 -1.9
2,479,603 - ECD_02385 0.28 +1.4
2,479,870 - ECD_02385 0.54 +0.6
2,479,975 + ECD_02385 0.63 -0.6
2,480,067 - ECD_02385 0.72 -0.5
2,480,070 + ECD_02385 0.72 -2.5
2,480,071 - ECD_02385 0.73 +0.3
2,480,071 - ECD_02385 0.73 +0.6
2,480,123 + ECD_02385 0.77 -1.8
2,480,123 + ECD_02385 0.77 -2.1
2,480,123 + ECD_02385 0.77 -0.6
2,480,124 - ECD_02385 0.77 -3.3
2,480,124 - ECD_02385 0.77 +0.3
2,480,124 - ECD_02385 0.77 -3.0
2,480,125 + ECD_02385 0.78 +1.6
2,480,126 - ECD_02385 0.78 +1.6
2,480,126 - ECD_02385 0.78 -0.7
2,480,144 + ECD_02385 0.79 -0.8
2,480,179 + ECD_02385 0.83 -1.6

Or see this region's nucleotide sequence