Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02232 and ECD_02233 overlap by 4 nucleotides ECD_02233 and ECD_02234 are separated by 89 nucleotides ECD_02234 and ECD_02235 are separated by 220 nucleotides
ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486
_02232
ECD_02233: ECD_02233 - histidine ABC transporter permease, at 2,312,483 to 2,313,169
_02233
ECD_02234: ECD_02234 - histidine ABC transporter periplasmic binding protein, at 2,313,259 to 2,314,041
_02234
ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044
_02235
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2312.273 kb on - strand, within ECD_02232 at 2312.273 kb on - strand, within ECD_02232 at 2312.301 kb on - strand, within ECD_02232 at 2312.800 kb on + strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.851 kb on - strand, within ECD_02233 at 2312.859 kb on + strand, within ECD_02233 at 2312.860 kb on - strand, within ECD_02233 at 2312.864 kb on - strand, within ECD_02233 at 2312.878 kb on + strand, within ECD_02233 at 2312.985 kb on - strand, within ECD_02233 at 2312.985 kb on - strand, within ECD_02233 at 2313.099 kb on - strand, within ECD_02233 at 2313.270 kb on - strand at 2313.309 kb on - strand at 2313.309 kb on - strand at 2313.375 kb on + strand, within ECD_02234 at 2313.514 kb on - strand, within ECD_02234 at 2313.714 kb on - strand, within ECD_02234 at 2313.714 kb on - strand, within ECD_02234 at 2313.840 kb on + strand, within ECD_02234 at 2313.841 kb on - strand, within ECD_02234 at 2313.841 kb on - strand, within ECD_02234 at 2314.260 kb on + strand at 2314.379 kb on - strand, within ECD_02235 at 2314.411 kb on - strand, within ECD_02235 at 2314.502 kb on + strand, within ECD_02235 at 2314.503 kb on - strand, within ECD_02235 at 2314.540 kb on - strand, within ECD_02235 at 2314.561 kb on - strand, within ECD_02235 at 2314.606 kb on - strand, within ECD_02235 at 2314.844 kb on - strand, within ECD_02235 at 2314.912 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.962 kb on - strand, within ECD_02235 at 2314.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,312,273 - ECD_02232 0.70 -0.6 2,312,273 - ECD_02232 0.70 -0.3 2,312,301 - ECD_02232 0.74 +1.8 2,312,800 + ECD_02233 0.46 -0.3 2,312,801 - ECD_02233 0.46 +0.1 2,312,801 - ECD_02233 0.46 +0.1 2,312,801 - ECD_02233 0.46 -1.1 2,312,801 - ECD_02233 0.46 -2.0 2,312,801 - ECD_02233 0.46 -0.6 2,312,851 - ECD_02233 0.54 +0.3 2,312,859 + ECD_02233 0.55 -0.6 2,312,860 - ECD_02233 0.55 -0.1 2,312,864 - ECD_02233 0.55 -0.4 2,312,878 + ECD_02233 0.57 -2.2 2,312,985 - ECD_02233 0.73 +0.1 2,312,985 - ECD_02233 0.73 -0.5 2,313,099 - ECD_02233 0.90 +0.8 2,313,270 - +1.2 2,313,309 - -0.6 2,313,309 - -1.4 2,313,375 + ECD_02234 0.15 -2.1 2,313,514 - ECD_02234 0.33 -0.5 2,313,714 - ECD_02234 0.58 -0.2 2,313,714 - ECD_02234 0.58 -0.2 2,313,840 + ECD_02234 0.74 -1.3 2,313,841 - ECD_02234 0.74 -0.2 2,313,841 - ECD_02234 0.74 -0.9 2,314,260 + +0.4 2,314,379 - ECD_02235 0.15 -0.2 2,314,411 - ECD_02235 0.19 -0.5 2,314,502 + ECD_02235 0.31 -0.3 2,314,503 - ECD_02235 0.31 -2.1 2,314,540 - ECD_02235 0.36 -0.5 2,314,561 - ECD_02235 0.38 +0.2 2,314,606 - ECD_02235 0.44 -0.2 2,314,844 - ECD_02235 0.74 +0.2 2,314,912 + ECD_02235 0.83 -0.4 2,314,938 + ECD_02235 0.86 +0.6 2,314,938 + ECD_02235 0.86 -0.6 2,314,938 + ECD_02235 0.86 +0.3 2,314,958 - ECD_02235 0.89 -0.3 2,314,958 - ECD_02235 0.89 -2.1 2,314,962 - ECD_02235 0.89 -0.3 2,314,984 - +0.2
Or see this region's nucleotide sequence