Strain Fitness in Escherichia coli BL21 around ECD_02234

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02232 and ECD_02233 overlap by 4 nucleotidesECD_02233 and ECD_02234 are separated by 89 nucleotidesECD_02234 and ECD_02235 are separated by 220 nucleotides ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486 _02232 ECD_02233: ECD_02233 - histidine ABC transporter permease, at 2,312,483 to 2,313,169 _02233 ECD_02234: ECD_02234 - histidine ABC transporter periplasmic binding protein, at 2,313,259 to 2,314,041 _02234 ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044 _02235 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -2 -1 0 1 2at 2312.273 kb on - strand, within ECD_02232at 2312.273 kb on - strand, within ECD_02232at 2312.301 kb on - strand, within ECD_02232at 2312.800 kb on + strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.851 kb on - strand, within ECD_02233at 2312.859 kb on + strand, within ECD_02233at 2312.860 kb on - strand, within ECD_02233at 2312.864 kb on - strand, within ECD_02233at 2312.878 kb on + strand, within ECD_02233at 2312.985 kb on - strand, within ECD_02233at 2312.985 kb on - strand, within ECD_02233at 2313.099 kb on - strand, within ECD_02233at 2313.270 kb on - strandat 2313.309 kb on - strandat 2313.309 kb on - strandat 2313.375 kb on + strand, within ECD_02234at 2313.514 kb on - strand, within ECD_02234at 2313.714 kb on - strand, within ECD_02234at 2313.714 kb on - strand, within ECD_02234at 2313.840 kb on + strand, within ECD_02234at 2313.841 kb on - strand, within ECD_02234at 2313.841 kb on - strand, within ECD_02234at 2314.260 kb on + strandat 2314.379 kb on - strand, within ECD_02235at 2314.411 kb on - strand, within ECD_02235at 2314.502 kb on + strand, within ECD_02235at 2314.503 kb on - strand, within ECD_02235at 2314.540 kb on - strand, within ECD_02235at 2314.561 kb on - strand, within ECD_02235at 2314.606 kb on - strand, within ECD_02235at 2314.844 kb on - strand, within ECD_02235at 2314.912 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.958 kb on - strand, within ECD_02235at 2314.958 kb on - strand, within ECD_02235at 2314.962 kb on - strand, within ECD_02235at 2314.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,312,273 - ECD_02232 0.70 -0.6
2,312,273 - ECD_02232 0.70 -0.3
2,312,301 - ECD_02232 0.74 +1.8
2,312,800 + ECD_02233 0.46 -0.3
2,312,801 - ECD_02233 0.46 +0.1
2,312,801 - ECD_02233 0.46 +0.1
2,312,801 - ECD_02233 0.46 -1.1
2,312,801 - ECD_02233 0.46 -2.0
2,312,801 - ECD_02233 0.46 -0.6
2,312,851 - ECD_02233 0.54 +0.3
2,312,859 + ECD_02233 0.55 -0.6
2,312,860 - ECD_02233 0.55 -0.1
2,312,864 - ECD_02233 0.55 -0.4
2,312,878 + ECD_02233 0.57 -2.2
2,312,985 - ECD_02233 0.73 +0.1
2,312,985 - ECD_02233 0.73 -0.5
2,313,099 - ECD_02233 0.90 +0.8
2,313,270 - +1.2
2,313,309 - -0.6
2,313,309 - -1.4
2,313,375 + ECD_02234 0.15 -2.1
2,313,514 - ECD_02234 0.33 -0.5
2,313,714 - ECD_02234 0.58 -0.2
2,313,714 - ECD_02234 0.58 -0.2
2,313,840 + ECD_02234 0.74 -1.3
2,313,841 - ECD_02234 0.74 -0.2
2,313,841 - ECD_02234 0.74 -0.9
2,314,260 + +0.4
2,314,379 - ECD_02235 0.15 -0.2
2,314,411 - ECD_02235 0.19 -0.5
2,314,502 + ECD_02235 0.31 -0.3
2,314,503 - ECD_02235 0.31 -2.1
2,314,540 - ECD_02235 0.36 -0.5
2,314,561 - ECD_02235 0.38 +0.2
2,314,606 - ECD_02235 0.44 -0.2
2,314,844 - ECD_02235 0.74 +0.2
2,314,912 + ECD_02235 0.83 -0.4
2,314,938 + ECD_02235 0.86 +0.6
2,314,938 + ECD_02235 0.86 -0.6
2,314,938 + ECD_02235 0.86 +0.3
2,314,958 - ECD_02235 0.89 -0.3
2,314,958 - ECD_02235 0.89 -2.1
2,314,962 - ECD_02235 0.89 -0.3
2,314,984 - +0.2

Or see this region's nucleotide sequence