Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02110 and ECD_02111 are separated by 3 nucleotides ECD_02111 and ECD_02112 are separated by 332 nucleotides
ECD_02110: ECD_02110 - microcin C ABC transporter ATPase, at 2,171,149 to 2,172,738
_02110
ECD_02111: ECD_02111 - uncharacterized protein, at 2,172,742 to 2,173,086
_02111
ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609
_02112
Position (kb)
2172
2173
2174 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2171.903 kb on - strand, within ECD_02110 at 2171.916 kb on - strand, within ECD_02110 at 2172.099 kb on - strand, within ECD_02110 at 2172.225 kb on + strand, within ECD_02110 at 2172.315 kb on - strand, within ECD_02110 at 2172.448 kb on - strand, within ECD_02110 at 2172.468 kb on - strand, within ECD_02110 at 2172.468 kb on - strand, within ECD_02110 at 2172.468 kb on - strand, within ECD_02110 at 2172.624 kb on - strand at 2172.642 kb on - strand at 2172.712 kb on - strand at 2172.723 kb on - strand at 2172.756 kb on - strand at 2172.756 kb on - strand at 2172.910 kb on - strand, within ECD_02111 at 2172.910 kb on - strand, within ECD_02111 at 2172.912 kb on - strand, within ECD_02111 at 2172.931 kb on - strand, within ECD_02111 at 2172.931 kb on - strand, within ECD_02111 at 2172.931 kb on - strand, within ECD_02111 at 2173.162 kb on - strand at 2173.223 kb on - strand at 2173.255 kb on - strand at 2173.255 kb on - strand at 2173.255 kb on - strand at 2173.255 kb on - strand at 2173.290 kb on - strand at 2173.341 kb on + strand at 2173.416 kb on - strand at 2173.552 kb on - strand, within ECD_02112 at 2173.805 kb on + strand, within ECD_02112 at 2173.958 kb on - strand, within ECD_02112 at 2173.974 kb on - strand, within ECD_02112 at 2173.998 kb on - strand, within ECD_02112 at 2174.010 kb on - strand, within ECD_02112
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,171,903 - ECD_02110 0.47 -0.2 2,171,916 - ECD_02110 0.48 +0.0 2,172,099 - ECD_02110 0.60 -0.9 2,172,225 + ECD_02110 0.68 -1.9 2,172,315 - ECD_02110 0.73 -1.0 2,172,448 - ECD_02110 0.82 +1.0 2,172,468 - ECD_02110 0.83 +0.8 2,172,468 - ECD_02110 0.83 -1.4 2,172,468 - ECD_02110 0.83 +0.2 2,172,624 - -0.7 2,172,642 - -2.2 2,172,712 - +1.6 2,172,723 - +0.8 2,172,756 - +1.6 2,172,756 - +2.0 2,172,910 - ECD_02111 0.49 -2.2 2,172,910 - ECD_02111 0.49 -1.0 2,172,912 - ECD_02111 0.49 -1.3 2,172,931 - ECD_02111 0.55 -3.5 2,172,931 - ECD_02111 0.55 -1.3 2,172,931 - ECD_02111 0.55 -2.6 2,173,162 - -1.2 2,173,223 - +1.1 2,173,255 - +0.4 2,173,255 - +1.8 2,173,255 - +1.5 2,173,255 - +1.4 2,173,290 - +2.1 2,173,341 + -1.1 2,173,416 - -0.2 2,173,552 - ECD_02112 0.11 +0.7 2,173,805 + ECD_02112 0.32 -0.8 2,173,958 - ECD_02112 0.45 -1.3 2,173,974 - ECD_02112 0.47 +0.3 2,173,998 - ECD_02112 0.49 -0.5 2,174,010 - ECD_02112 0.50 -2.1
Or see this region's nucleotide sequence