Strain Fitness in Escherichia coli BL21 around ECD_02043

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02040 and ECD_02041 overlap by 82 nucleotidesECD_02041 and ECD_02042 are separated by 28 nucleotidesECD_02042 and ECD_02043 are separated by 262 nucleotidesECD_02043 and ECD_02044 are separated by 131 nucleotides ECD_02040: ECD_02040 - IS1 protein InsB, at 2,086,745 to 2,087,248 _02040 ECD_02041: ECD_02041 - IS1 protein InsA, at 2,087,167 to 2,087,442 _02041 ECD_02042: ECD_02042 - DUF2574 family protein, at 2,087,471 to 2,087,659 _02042 ECD_02043: ECD_02043 - antiporter inner membrane protein, at 2,087,922 to 2,089,031 _02043 ECD_02044: ECD_02044 - methionyl-tRNA synthetase, at 2,089,163 to 2,091,196 _02044 Position (kb) 2087 2088 2089 2090Strain fitness (log2 ratio) -2 -1 0 1 2at 2087.533 kb on + strand, within ECD_02042at 2087.539 kb on + strand, within ECD_02042at 2087.649 kb on + strandat 2087.675 kb on + strandat 2087.716 kb on + strandat 2087.716 kb on + strandat 2087.716 kb on + strandat 2087.724 kb on + strandat 2087.724 kb on + strandat 2088.008 kb on - strandat 2088.075 kb on + strand, within ECD_02043at 2088.075 kb on + strand, within ECD_02043at 2088.075 kb on + strand, within ECD_02043at 2088.076 kb on - strand, within ECD_02043at 2088.113 kb on + strand, within ECD_02043at 2088.113 kb on + strand, within ECD_02043at 2088.114 kb on - strand, within ECD_02043at 2088.179 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.512 kb on + strand, within ECD_02043at 2088.513 kb on - strand, within ECD_02043at 2088.524 kb on + strand, within ECD_02043at 2088.592 kb on + strand, within ECD_02043at 2088.593 kb on - strand, within ECD_02043at 2088.671 kb on + strand, within ECD_02043at 2088.723 kb on - strand, within ECD_02043at 2089.049 kb on - strandat 2089.049 kb on - strandat 2089.051 kb on - strandat 2089.054 kb on + strandat 2089.070 kb on - strandat 2089.075 kb on - strandat 2089.128 kb on + strandat 2089.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,087,533 + ECD_02042 0.33 -0.9
2,087,539 + ECD_02042 0.36 -2.0
2,087,649 + +0.3
2,087,675 + -0.3
2,087,716 + -0.8
2,087,716 + +0.4
2,087,716 + -1.0
2,087,724 + -1.0
2,087,724 + -0.6
2,088,008 - +0.1
2,088,075 + ECD_02043 0.14 -1.0
2,088,075 + ECD_02043 0.14 -1.1
2,088,075 + ECD_02043 0.14 +0.5
2,088,076 - ECD_02043 0.14 +0.1
2,088,113 + ECD_02043 0.17 -0.9
2,088,113 + ECD_02043 0.17 +0.7
2,088,114 - ECD_02043 0.17 -1.3
2,088,179 + ECD_02043 0.23 +0.7
2,088,188 + ECD_02043 0.24 -0.0
2,088,188 + ECD_02043 0.24 +1.0
2,088,188 + ECD_02043 0.24 -0.3
2,088,512 + ECD_02043 0.53 -0.5
2,088,513 - ECD_02043 0.53 +1.1
2,088,524 + ECD_02043 0.54 +1.3
2,088,592 + ECD_02043 0.60 -0.6
2,088,593 - ECD_02043 0.60 +1.5
2,088,671 + ECD_02043 0.67 -1.8
2,088,723 - ECD_02043 0.72 +1.9
2,089,049 - +0.2
2,089,049 - +0.7
2,089,051 - +1.6
2,089,054 + +0.7
2,089,070 - +1.1
2,089,075 - -0.2
2,089,128 + +1.4
2,089,128 + -0.5

Or see this region's nucleotide sequence