Strain Fitness in Escherichia coli BL21 around ECD_02019

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02018 and ECD_02019 are separated by 3 nucleotidesECD_02019 and ECD_02020 are separated by 30 nucleotidesECD_02020 and ECD_02021 are separated by 9 nucleotides ECD_02018: ECD_02018 - galactitol-specific enzyme IIC component of PTS, at 2,070,726 to 2,072,081 _02018 ECD_02019: ECD_02019 - galactitol-specific enzyme IIB component of PTS, at 2,072,085 to 2,072,369 _02019 ECD_02020: ECD_02020 - galactitol-specific enzyme IIA component of PTS, at 2,072,400 to 2,072,852 _02020 ECD_02021: ECD_02021 - D-tagatose 1,6-bisphosphate aldolase 2, subunit, at 2,072,862 to 2,074,124 _02021 Position (kb) 2072 2073Strain fitness (log2 ratio) -1 0 1 2 3at 2071.306 kb on - strand, within ECD_02018at 2071.526 kb on - strand, within ECD_02018at 2071.548 kb on - strand, within ECD_02018at 2071.554 kb on - strand, within ECD_02018at 2071.608 kb on - strand, within ECD_02018at 2072.095 kb on - strandat 2072.649 kb on - strand, within ECD_02020at 2072.941 kb on - strandat 2072.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,071,306 - ECD_02018 0.43 +0.2
2,071,526 - ECD_02018 0.59 +0.6
2,071,548 - ECD_02018 0.61 +3.0
2,071,554 - ECD_02018 0.61 +1.5
2,071,608 - ECD_02018 0.65 +2.1
2,072,095 - +1.0
2,072,649 - ECD_02020 0.55 +1.4
2,072,941 - +2.9
2,072,941 - +2.3

Or see this region's nucleotide sequence