Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01972 and ECD_01973 are separated by 317 nucleotides ECD_01973 and ECD_01974 are separated by 100 nucleotides
ECD_01972: ECD_01972 - uridine/cytidine kinase, at 2,041,314 to 2,041,955
_01972
ECD_01973: ECD_01973 - putative diguanylate cyclase, at 2,042,273 to 2,045,590
_01973
ECD_01974: ECD_01974 - 3-methyl-adenine DNA glycosylase II, at 2,045,691 to 2,046,539
_01974
Position (kb)
2042
2043
2044
2045
2046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2041.650 kb on - strand, within ECD_01972 at 2041.656 kb on - strand, within ECD_01972 at 2041.656 kb on - strand, within ECD_01972 at 2041.667 kb on - strand, within ECD_01972 at 2041.769 kb on + strand, within ECD_01972 at 2041.808 kb on - strand, within ECD_01972 at 2042.298 kb on + strand at 2042.298 kb on + strand at 2042.298 kb on + strand at 2042.444 kb on + strand at 2042.501 kb on - strand at 2042.595 kb on + strand at 2042.751 kb on + strand, within ECD_01973 at 2042.929 kb on + strand, within ECD_01973 at 2043.073 kb on + strand, within ECD_01973 at 2043.135 kb on - strand, within ECD_01973 at 2043.135 kb on - strand, within ECD_01973 at 2043.135 kb on - strand, within ECD_01973 at 2043.413 kb on + strand, within ECD_01973 at 2043.413 kb on + strand, within ECD_01973 at 2043.628 kb on + strand, within ECD_01973 at 2043.698 kb on + strand, within ECD_01973 at 2043.775 kb on + strand, within ECD_01973 at 2043.847 kb on + strand, within ECD_01973 at 2043.847 kb on + strand, within ECD_01973 at 2043.881 kb on - strand, within ECD_01973 at 2043.883 kb on + strand, within ECD_01973 at 2043.901 kb on + strand, within ECD_01973 at 2044.059 kb on + strand, within ECD_01973 at 2044.087 kb on + strand, within ECD_01973 at 2044.213 kb on + strand, within ECD_01973 at 2044.213 kb on + strand, within ECD_01973 at 2044.247 kb on - strand, within ECD_01973 at 2044.519 kb on + strand, within ECD_01973 at 2044.520 kb on - strand, within ECD_01973 at 2044.621 kb on + strand, within ECD_01973 at 2044.622 kb on - strand, within ECD_01973 at 2044.651 kb on + strand, within ECD_01973 at 2044.761 kb on - strand, within ECD_01973 at 2045.200 kb on - strand, within ECD_01973 at 2045.202 kb on + strand, within ECD_01973 at 2045.345 kb on + strand at 2045.368 kb on - strand at 2045.519 kb on + strand at 2045.633 kb on - strand at 2045.744 kb on - strand at 2045.958 kb on + strand, within ECD_01974 at 2045.959 kb on - strand, within ECD_01974 at 2046.021 kb on - strand, within ECD_01974 at 2046.086 kb on - strand, within ECD_01974 at 2046.116 kb on - strand, within ECD_01974 at 2046.174 kb on + strand, within ECD_01974 at 2046.437 kb on - strand, within ECD_01974 at 2046.437 kb on - strand, within ECD_01974 at 2046.536 kb on - strand at 2046.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,041,650 - ECD_01972 0.52 -1.5 2,041,656 - ECD_01972 0.53 +1.1 2,041,656 - ECD_01972 0.53 -0.6 2,041,667 - ECD_01972 0.55 -0.3 2,041,769 + ECD_01972 0.71 -0.9 2,041,808 - ECD_01972 0.77 -0.2 2,042,298 + -2.6 2,042,298 + -2.4 2,042,298 + +0.3 2,042,444 + -0.5 2,042,501 - -1.4 2,042,595 + -1.0 2,042,751 + ECD_01973 0.14 -2.0 2,042,929 + ECD_01973 0.20 -1.4 2,043,073 + ECD_01973 0.24 +1.3 2,043,135 - ECD_01973 0.26 -1.6 2,043,135 - ECD_01973 0.26 -0.0 2,043,135 - ECD_01973 0.26 -0.8 2,043,413 + ECD_01973 0.34 -0.1 2,043,413 + ECD_01973 0.34 +0.6 2,043,628 + ECD_01973 0.41 -1.1 2,043,698 + ECD_01973 0.43 +0.9 2,043,775 + ECD_01973 0.45 -1.0 2,043,847 + ECD_01973 0.47 +0.9 2,043,847 + ECD_01973 0.47 +0.8 2,043,881 - ECD_01973 0.48 -0.0 2,043,883 + ECD_01973 0.49 -0.6 2,043,901 + ECD_01973 0.49 -0.5 2,044,059 + ECD_01973 0.54 +0.3 2,044,087 + ECD_01973 0.55 -0.1 2,044,213 + ECD_01973 0.58 -1.3 2,044,213 + ECD_01973 0.58 -1.3 2,044,247 - ECD_01973 0.59 -0.4 2,044,519 + ECD_01973 0.68 -1.1 2,044,520 - ECD_01973 0.68 -0.9 2,044,621 + ECD_01973 0.71 -1.6 2,044,622 - ECD_01973 0.71 -1.4 2,044,651 + ECD_01973 0.72 +0.5 2,044,761 - ECD_01973 0.75 -1.7 2,045,200 - ECD_01973 0.88 -1.0 2,045,202 + ECD_01973 0.88 -0.8 2,045,345 + -1.6 2,045,368 - -1.4 2,045,519 + +0.3 2,045,633 - +2.4 2,045,744 - -0.9 2,045,958 + ECD_01974 0.31 -0.0 2,045,959 - ECD_01974 0.32 -0.0 2,046,021 - ECD_01974 0.39 +0.7 2,046,086 - ECD_01974 0.47 -0.8 2,046,116 - ECD_01974 0.50 +0.7 2,046,174 + ECD_01974 0.57 -0.3 2,046,437 - ECD_01974 0.88 +0.6 2,046,437 - ECD_01974 0.88 -0.5 2,046,536 - +1.6 2,046,536 - -0.0
Or see this region's nucleotide sequence