Strain Fitness in Escherichia coli BL21 around ECD_01960

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01959 and ECD_01960 are separated by 26 nucleotidesECD_01960 and ECD_01961 are separated by 15 nucleotidesECD_01961 and ECD_01962 are separated by 10 nucleotides ECD_01959: ECD_01959 - GDP-D-mannose dehydratase, NAD(P)-binding, at 2,026,199 to 2,027,320 _01959 ECD_01960: ECD_01960 - putative acyl transferase, at 2,027,347 to 2,027,895 _01960 ECD_01961: ECD_01961 - putative glycosyl transferase, at 2,027,911 to 2,028,657 _01961 ECD_01962: ECD_01962 - putative colanic acid polymerase, at 2,028,668 to 2,029,885 _01962 Position (kb) 2027 2028Strain fitness (log2 ratio) -1 0 1 2at 2026.544 kb on + strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.833 kb on + strand, within ECD_01959at 2027.017 kb on + strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959at 2027.272 kb on - strandat 2027.530 kb on - strand, within ECD_01960at 2027.579 kb on - strand, within ECD_01960at 2028.490 kb on - strand, within ECD_01961

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,026,544 + ECD_01959 0.31 +0.4
2,026,620 - ECD_01959 0.38 +0.5
2,026,620 - ECD_01959 0.38 +1.0
2,026,833 + ECD_01959 0.57 +1.8
2,027,017 + ECD_01959 0.73 +0.9
2,027,120 - ECD_01959 0.82 -0.5
2,027,120 - ECD_01959 0.82 -1.3
2,027,272 - +2.3
2,027,530 - ECD_01960 0.33 +1.3
2,027,579 - ECD_01960 0.42 +0.5
2,028,490 - ECD_01961 0.78 -0.7

Or see this region's nucleotide sequence