Strain Fitness in Escherichia coli BL21 around ECD_01917

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01916 and ECD_01917 are separated by 178 nucleotidesECD_01917 and ECD_01918 are separated by 266 nucleotides ECD_01916: ECD_01916 - UPF0394 family inner membrane protein, at 1,980,711 to 1,981,769 _01916 ECD_01917: ECD_01917 - putrescine importer, low affinity, at 1,981,948 to 1,983,306 _01917 ECD_01918: ECD_01918 - LysR family putative transcriptional regulator, at 1,983,573 to 1,984,502 _01918 Position (kb) 1981 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1 2at 1981.026 kb on - strand, within ECD_01916at 1981.101 kb on - strand, within ECD_01916at 1981.338 kb on - strand, within ECD_01916at 1981.344 kb on - strand, within ECD_01916at 1981.344 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916at 1981.542 kb on - strand, within ECD_01916at 1981.570 kb on + strand, within ECD_01916at 1981.571 kb on - strand, within ECD_01916at 1981.670 kb on - strandat 1981.670 kb on - strandat 1981.670 kb on - strandat 1981.756 kb on - strandat 1982.118 kb on - strand, within ECD_01917at 1982.321 kb on - strand, within ECD_01917at 1982.370 kb on - strand, within ECD_01917at 1982.370 kb on - strand, within ECD_01917at 1982.417 kb on - strand, within ECD_01917at 1982.472 kb on - strand, within ECD_01917at 1982.472 kb on - strand, within ECD_01917at 1982.834 kb on - strand, within ECD_01917at 1982.866 kb on - strand, within ECD_01917at 1982.866 kb on - strand, within ECD_01917at 1982.887 kb on - strand, within ECD_01917at 1983.019 kb on - strand, within ECD_01917at 1983.054 kb on - strand, within ECD_01917at 1983.143 kb on + strand, within ECD_01917at 1983.236 kb on - strandat 1983.236 kb on - strandat 1983.236 kb on - strandat 1983.262 kb on - strandat 1983.262 kb on - strandat 1983.340 kb on - strandat 1983.404 kb on - strandat 1983.404 kb on - strandat 1983.404 kb on - strandat 1983.435 kb on - strandat 1983.521 kb on - strandat 1983.900 kb on - strand, within ECD_01918at 1984.067 kb on + strand, within ECD_01918at 1984.146 kb on - strand, within ECD_01918at 1984.303 kb on - strand, within ECD_01918

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,981,026 - ECD_01916 0.30 -0.3
1,981,101 - ECD_01916 0.37 -0.7
1,981,338 - ECD_01916 0.59 +0.2
1,981,344 - ECD_01916 0.60 -0.5
1,981,344 - ECD_01916 0.60 -0.8
1,981,422 - ECD_01916 0.67 +0.3
1,981,422 - ECD_01916 0.67 -0.8
1,981,422 - ECD_01916 0.67 -0.8
1,981,542 - ECD_01916 0.78 -0.9
1,981,570 + ECD_01916 0.81 -2.3
1,981,571 - ECD_01916 0.81 -2.2
1,981,670 - -2.4
1,981,670 - -2.1
1,981,670 - -2.4
1,981,756 - -0.2
1,982,118 - ECD_01917 0.13 +0.1
1,982,321 - ECD_01917 0.27 -0.1
1,982,370 - ECD_01917 0.31 +1.0
1,982,370 - ECD_01917 0.31 +0.6
1,982,417 - ECD_01917 0.35 +1.1
1,982,472 - ECD_01917 0.39 +1.8
1,982,472 - ECD_01917 0.39 +1.3
1,982,834 - ECD_01917 0.65 +0.8
1,982,866 - ECD_01917 0.68 +1.0
1,982,866 - ECD_01917 0.68 +1.9
1,982,887 - ECD_01917 0.69 +0.9
1,983,019 - ECD_01917 0.79 +0.6
1,983,054 - ECD_01917 0.81 -0.5
1,983,143 + ECD_01917 0.88 -1.4
1,983,236 - +1.1
1,983,236 - +0.9
1,983,236 - +0.8
1,983,262 - +0.5
1,983,262 - -0.1
1,983,340 - +0.3
1,983,404 - +1.1
1,983,404 - +0.5
1,983,404 - +0.4
1,983,435 - +0.4
1,983,521 - -0.8
1,983,900 - ECD_01918 0.35 +0.9
1,984,067 + ECD_01918 0.53 -1.1
1,984,146 - ECD_01918 0.62 -1.7
1,984,303 - ECD_01918 0.78 -1.5

Or see this region's nucleotide sequence