Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01916 and ECD_01917 are separated by 178 nucleotides ECD_01917 and ECD_01918 are separated by 266 nucleotides
ECD_01916: ECD_01916 - UPF0394 family inner membrane protein, at 1,980,711 to 1,981,769
_01916
ECD_01917: ECD_01917 - putrescine importer, low affinity, at 1,981,948 to 1,983,306
_01917
ECD_01918: ECD_01918 - LysR family putative transcriptional regulator, at 1,983,573 to 1,984,502
_01918
Position (kb)
1981
1982
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1981.026 kb on - strand, within ECD_01916 at 1981.101 kb on - strand, within ECD_01916 at 1981.338 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.542 kb on - strand, within ECD_01916 at 1981.570 kb on + strand, within ECD_01916 at 1981.571 kb on - strand, within ECD_01916 at 1981.670 kb on - strand at 1981.670 kb on - strand at 1981.670 kb on - strand at 1981.756 kb on - strand at 1982.118 kb on - strand, within ECD_01917 at 1982.321 kb on - strand, within ECD_01917 at 1982.370 kb on - strand, within ECD_01917 at 1982.370 kb on - strand, within ECD_01917 at 1982.417 kb on - strand, within ECD_01917 at 1982.472 kb on - strand, within ECD_01917 at 1982.472 kb on - strand, within ECD_01917 at 1982.834 kb on - strand, within ECD_01917 at 1982.866 kb on - strand, within ECD_01917 at 1982.866 kb on - strand, within ECD_01917 at 1982.887 kb on - strand, within ECD_01917 at 1983.019 kb on - strand, within ECD_01917 at 1983.054 kb on - strand, within ECD_01917 at 1983.143 kb on + strand, within ECD_01917 at 1983.236 kb on - strand at 1983.236 kb on - strand at 1983.236 kb on - strand at 1983.262 kb on - strand at 1983.262 kb on - strand at 1983.340 kb on - strand at 1983.404 kb on - strand at 1983.404 kb on - strand at 1983.404 kb on - strand at 1983.435 kb on - strand at 1983.521 kb on - strand at 1983.900 kb on - strand, within ECD_01918 at 1984.067 kb on + strand, within ECD_01918 at 1984.146 kb on - strand, within ECD_01918 at 1984.303 kb on - strand, within ECD_01918
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,981,026 - ECD_01916 0.30 -0.3 1,981,101 - ECD_01916 0.37 -0.7 1,981,338 - ECD_01916 0.59 +0.2 1,981,344 - ECD_01916 0.60 -0.5 1,981,344 - ECD_01916 0.60 -0.8 1,981,422 - ECD_01916 0.67 +0.3 1,981,422 - ECD_01916 0.67 -0.8 1,981,422 - ECD_01916 0.67 -0.8 1,981,542 - ECD_01916 0.78 -0.9 1,981,570 + ECD_01916 0.81 -2.3 1,981,571 - ECD_01916 0.81 -2.2 1,981,670 - -2.4 1,981,670 - -2.1 1,981,670 - -2.4 1,981,756 - -0.2 1,982,118 - ECD_01917 0.13 +0.1 1,982,321 - ECD_01917 0.27 -0.1 1,982,370 - ECD_01917 0.31 +1.0 1,982,370 - ECD_01917 0.31 +0.6 1,982,417 - ECD_01917 0.35 +1.1 1,982,472 - ECD_01917 0.39 +1.8 1,982,472 - ECD_01917 0.39 +1.3 1,982,834 - ECD_01917 0.65 +0.8 1,982,866 - ECD_01917 0.68 +1.0 1,982,866 - ECD_01917 0.68 +1.9 1,982,887 - ECD_01917 0.69 +0.9 1,983,019 - ECD_01917 0.79 +0.6 1,983,054 - ECD_01917 0.81 -0.5 1,983,143 + ECD_01917 0.88 -1.4 1,983,236 - +1.1 1,983,236 - +0.9 1,983,236 - +0.8 1,983,262 - +0.5 1,983,262 - -0.1 1,983,340 - +0.3 1,983,404 - +1.1 1,983,404 - +0.5 1,983,404 - +0.4 1,983,435 - +0.4 1,983,521 - -0.8 1,983,900 - ECD_01918 0.35 +0.9 1,984,067 + ECD_01918 0.53 -1.1 1,984,146 - ECD_01918 0.62 -1.7 1,984,303 - ECD_01918 0.78 -1.5
Or see this region's nucleotide sequence