Strain Fitness in Escherichia coli BL21 around ECD_01603

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01601 and ECD_01602 are separated by 3 nucleotidesECD_01602 and ECD_01603 overlap by 1 nucleotidesECD_01603 and ECD_01604 are separated by 610 nucleotides ECD_01601: ECD_01601 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,655,400 to 1,656,020 _01601 ECD_01602: ECD_01602 - SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase, at 1,656,024 to 1,656,719 _01602 ECD_01603: ECD_01603 - DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III), at 1,656,719 to 1,657,354 _01603 ECD_01604: ECD_01604 - dipeptide and tripeptide permease A, at 1,657,965 to 1,659,467 _01604 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -2 -1 0 1at 1657.908 kb on + strandat 1658.034 kb on + strandat 1658.203 kb on + strand, within ECD_01604at 1658.318 kb on + strand, within ECD_01604at 1658.351 kb on + strand, within ECD_01604

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,657,908 + -0.9
1,658,034 + +0.5
1,658,203 + ECD_01604 0.16 -0.0
1,658,318 + ECD_01604 0.23 -1.8
1,658,351 + ECD_01604 0.26 -0.9

Or see this region's nucleotide sequence