Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01599 and ECD_01600 are separated by 0 nucleotides ECD_01600 and ECD_01601 are separated by 3 nucleotides ECD_01601 and ECD_01602 are separated by 3 nucleotides
ECD_01599: ECD_01599 - SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex, at 1,652,115 to 1,654,337
_01599
ECD_01600: ECD_01600 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,654,338 to 1,655,396
_01600
ECD_01601: ECD_01601 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,655,400 to 1,656,020
_01601
ECD_01602: ECD_01602 - SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase, at 1,656,024 to 1,656,719
_01602
Position (kb) 1654
1655
1656 Strain fitness (log2 ratio) -2
-1
0
1 at 1653.548 kb on + strand, within ECD_01599 at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.913 kb on + strand, within ECD_01600 at 1654.952 kb on + strand, within ECD_01600 at 1655.562 kb on + strand, within ECD_01601
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,653,548 + ECD_01599 0.64 -0.2 1,654,355 + -0.5 1,654,355 + -0.9 1,654,355 + -1.3 1,654,913 + ECD_01600 0.54 -1.5 1,654,952 + ECD_01600 0.58 -0.1 1,655,562 + ECD_01601 0.26 -2.7
Or see this region's nucleotide sequence