Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01559 and ECD_01560 are separated by 42 nucleotides ECD_01560 and ECD_01561 are separated by 194 nucleotides ECD_01561 and ECD_01562 overlap by 48 nucleotides ECD_01562 and ECD_01563 are separated by 124 nucleotides
ECD_01559: ECD_01559 - oxidoreductase, membrane subunit, at 1,608,806 to 1,609,660
_01559
ECD_01560: ECD_01560 - twin-argninine leader-binding protein for DmsA and TorA, at 1,609,703 to 1,610,317
_01560
ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768
_01561
ECD_01562: ECD_01562 - putative dethiobiotin synthetase, at 1,611,721 to 1,612,416
_01562
ECD_01563: ECD_01563 - glucosamine anaerobic growth regulon transcriptional repressor; autorepressor, at 1,612,541 to 1,613,761
_01563
Position (kb)
1610
1611
1612 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1609.564 kb on + strand, within ECD_01559 at 1610.487 kb on - strand at 1610.765 kb on - strand, within ECD_01561 at 1611.043 kb on - strand, within ECD_01561 at 1611.140 kb on + strand, within ECD_01561 at 1611.777 kb on - strand at 1612.085 kb on - strand, within ECD_01562 at 1612.201 kb on - strand, within ECD_01562 at 1612.305 kb on + strand, within ECD_01562 at 1612.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,609,564 + ECD_01559 0.89 +0.7 1,610,487 - +0.0 1,610,765 - ECD_01561 0.20 -1.1 1,611,043 - ECD_01561 0.42 -1.3 1,611,140 + ECD_01561 0.50 -0.7 1,611,777 - -1.7 1,612,085 - ECD_01562 0.52 -2.6 1,612,201 - ECD_01562 0.69 -0.4 1,612,305 + ECD_01562 0.84 +2.5 1,612,446 - +1.6
Or see this region's nucleotide sequence