Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01489 and ECD_01490 are separated by 19 nucleotides ECD_01490 and ECD_01491 are separated by 31 nucleotides ECD_01491 and ECD_01492 are separated by 30 nucleotides ECD_01492 and ECD_01493 are separated by 194 nucleotides
ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850
_01489
ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253
_01490
ECD_01491: ECD_01491 - periplasmic mar operon regulator, at 1,569,285 to 1,569,503
_01491
ECD_01492: ECD_01492 - cysteine and O-acetyl-L-serine efflux system, at 1,569,534 to 1,570,433
_01492
ECD_01493: ECD_01493 - putative transporter, at 1,570,628 to 1,571,815
_01493
Position (kb)
1569
1570
1571 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1568.577 kb on + strand, within ECD_01489 at 1568.634 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.715 kb on + strand, within ECD_01489 at 1568.735 kb on + strand, within ECD_01489 at 1569.038 kb on + strand, within ECD_01490 at 1569.483 kb on + strand at 1569.484 kb on - strand at 1569.484 kb on - strand at 1569.486 kb on - strand at 1569.536 kb on - strand at 1569.587 kb on - strand at 1569.652 kb on - strand, within ECD_01492 at 1569.719 kb on - strand, within ECD_01492 at 1569.804 kb on - strand, within ECD_01492 at 1569.975 kb on - strand, within ECD_01492 at 1570.601 kb on + strand at 1570.635 kb on + strand at 1570.725 kb on - strand at 1570.888 kb on + strand, within ECD_01493
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,568,577 + ECD_01489 0.37 +2.5 1,568,634 + ECD_01489 0.50 +1.7 1,568,715 + ECD_01489 0.69 +2.6 1,568,715 + ECD_01489 0.69 +2.2 1,568,735 + ECD_01489 0.73 +2.1 1,569,038 + ECD_01490 0.44 -2.0 1,569,483 + -1.5 1,569,484 - -1.7 1,569,484 - -1.3 1,569,486 - -1.6 1,569,536 - -1.2 1,569,587 - -0.8 1,569,652 - ECD_01492 0.13 +0.0 1,569,719 - ECD_01492 0.21 -1.9 1,569,804 - ECD_01492 0.30 -1.5 1,569,975 - ECD_01492 0.49 +2.8 1,570,601 + -1.0 1,570,635 + +3.1 1,570,725 - -0.1 1,570,888 + ECD_01493 0.22 -1.5
Or see this region's nucleotide sequence