Strain Fitness in Escherichia coli BL21 around ECD_01492

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01489 and ECD_01490 are separated by 19 nucleotidesECD_01490 and ECD_01491 are separated by 31 nucleotidesECD_01491 and ECD_01492 are separated by 30 nucleotidesECD_01492 and ECD_01493 are separated by 194 nucleotides ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850 _01489 ECD_01490: ECD_01490 - multiple antibiotic resistance transcriptional regulator, at 1,568,870 to 1,569,253 _01490 ECD_01491: ECD_01491 - periplasmic mar operon regulator, at 1,569,285 to 1,569,503 _01491 ECD_01492: ECD_01492 - cysteine and O-acetyl-L-serine efflux system, at 1,569,534 to 1,570,433 _01492 ECD_01493: ECD_01493 - putative transporter, at 1,570,628 to 1,571,815 _01493 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1568.577 kb on + strand, within ECD_01489at 1568.634 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.715 kb on + strand, within ECD_01489at 1568.735 kb on + strand, within ECD_01489at 1569.038 kb on + strand, within ECD_01490at 1569.483 kb on + strandat 1569.484 kb on - strandat 1569.484 kb on - strandat 1569.486 kb on - strandat 1569.536 kb on - strandat 1569.587 kb on - strandat 1569.652 kb on - strand, within ECD_01492at 1569.719 kb on - strand, within ECD_01492at 1569.804 kb on - strand, within ECD_01492at 1569.975 kb on - strand, within ECD_01492at 1570.601 kb on + strandat 1570.635 kb on + strandat 1570.725 kb on - strandat 1570.888 kb on + strand, within ECD_01493

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,568,577 + ECD_01489 0.37 +2.5
1,568,634 + ECD_01489 0.50 +1.7
1,568,715 + ECD_01489 0.69 +2.6
1,568,715 + ECD_01489 0.69 +2.2
1,568,735 + ECD_01489 0.73 +2.1
1,569,038 + ECD_01490 0.44 -2.0
1,569,483 + -1.5
1,569,484 - -1.7
1,569,484 - -1.3
1,569,486 - -1.6
1,569,536 - -1.2
1,569,587 - -0.8
1,569,652 - ECD_01492 0.13 +0.0
1,569,719 - ECD_01492 0.21 -1.9
1,569,804 - ECD_01492 0.30 -1.5
1,569,975 - ECD_01492 0.49 +2.8
1,570,601 + -1.0
1,570,635 + +3.1
1,570,725 - -0.1
1,570,888 + ECD_01493 0.22 -1.5

Or see this region's nucleotide sequence